Gene detail

Detail information of GWHGAAZE017960

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008239321.1	0	PREDICTED: copper amine oxidase 1-like [Prunus mume]
Swissprot	tr\|Q43077\|AMO_PEA	2E-60	Primary amine oxidase (Precursor)
trEMBL	tr\|B9RAV9\|B9RAV9_RICCO	0	Copper amine oxidase, putative {ECO:0000313\|EMBL:EEF51936.1}
TAIR10	AT2G42490.1	0	Copper amine oxidase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	12896508	12902061	-
GWHAAZE00000005	mRNA	12896508	12902061	-
GWHAAZE00000005	exon	12896508	12896660	-
GWHAAZE00000005	exon	12897433	12897514	-
GWHAAZE00000005	exon	12897710	12897978	-
GWHAAZE00000005	exon	12898610	12898750	-
GWHAAZE00000005	exon	12899035	12899220	-
GWHAAZE00000005	exon	12899519	12899671	-
GWHAAZE00000005	exon	12899782	12899997	-
GWHAAZE00000005	exon	12900102	12900432	-
GWHAAZE00000005	exon	12900562	12900674	-
GWHAAZE00000005	exon	12901577	12901882	-
GWHAAZE00000005	exon	12901990	12902061	-
GWHAAZE00000005	CDS	12901990	12902061	-
GWHAAZE00000005	CDS	12901577	12901882	-
GWHAAZE00000005	CDS	12900562	12900674	-
GWHAAZE00000005	CDS	12900102	12900432	-
GWHAAZE00000005	CDS	12899782	12899997	-
GWHAAZE00000005	CDS	12899519	12899671	-
GWHAAZE00000005	CDS	12899035	12899220	-
GWHAAZE00000005	CDS	12898610	12898750	-
GWHAAZE00000005	CDS	12897710	12897978	-
GWHAAZE00000005	CDS	12897433	12897514	-
GWHAAZE00000005	CDS	12896508	12896660	-

Transcript Sequence
>GWHTAAZE017982 ATGCTAAGGGCGCAAACTAGCCATCCTTTGGACCCTTTATCTGCTGCTGAGATCTCAGTGGCTGTAGCAACTGTCAGAGATGGCATGCGGTTTGTTGAGGTGGTTCTGAAAGAACCAGATAAACATGTTGTTGCATTGGCAGATGCATATTTTTTCCCACCTTTCCAGCCATCATTACTGCCAAGAACCAAAGGTGGAGCCGTAATTCCCAGTAAGCTCCCTCCAAGGCGAGCTAGACTTGTAGTTTACAACAAAAAATCAAACGAGACAAGTGTATGGATTGTTGAACTATCTGAAGTGCATGCAGCAACTCGAGGTGGACATCACAGAGGAAAAGTCATTTCATCACAAGTTATTCGGGATGTGCAGCCTCCTATGGATGCTGTGGAATACGCTGAATGTGAAGCAGTTGTAAAAGATTATCCTCCGTTCCAGGAGGCCATGAAGAAGAGGGGTATTGTGGACATGGATCTTGTGATGGTTGACGCTTGGTGTGTTGGTTATCACAGTGATGCTGATGCCCCTAGCCGCAGACTAGCCAGACCACTTATATTCTGTAGAACAGAAAGTGACTGCCCAATGGAAAATGGTTACGCACGTCCAGTTGAGGGCATTTATGTTCTTGTTGATATGCAAAATATGGTGGTGATTGAGTTTGAGGACCGTAAACTTGTTCCCTTACCTCCGGCTGATCCATTGAGGAATTACACTGCTGGAGAAACTCGAGGTGGGGTTGATCGAAGTGATGTGAAGCCCCTACAAATTGTTCAACCTGAGGGTCCGAGTTTCCGTGTTAATGGGCATTATGTTGAGTGGCAGAAGTGGAATTTTCGAATTGGTTTCACTCCTAGGGAGGGTTTGGTTATGCATTCTGTTGCATATGTTGACGGTAGTCGAGGTCGAAGACCAATAGCAAATAGGTTGAGTTTTGTGGAGATGGTTGTGCCTTATGGTGATCCAAATGATCCACATTACAGGAAGAATGCATTTGATGCAGGGGAAGATGGCCTCGGGAAAAATGCTCATTCTCTTAAGAAGGGTTGTGATTGTTTGGGATATATCAAGTACTTTGATGCCCATTTTACAAATTTCACTGGGGGCGTTGACACGATTGAAAATTGTGTTTGTTTGCACGAGGAGGATCATGGAATTCTTTGGAAGCACCAAGACTGGAGAACTGGCTTAGCTGAAGATGGGAAAATTGAGGCAGAAGTTAAACTTACTGGAATTCTAAGCTTAGGAGCATTGCAACCTGGAGAATCTCGAAAATATGGTACAACAATTGCCCCAGGACTCTATGCACCAGTTCACCAACACTTTTTTGTTGCCCGCATGGATATGGCTGTTGATTGTAAGCCTGGAGAAGCATACAATCAGGTTGTTGAGGTTGATGTTAAAGTAGAAGAACCAGGGACGACTAATGTGCACAACAATGCATTCTACACAGAAGAAACAGTACTCAGATCTGAGTTGCAAGCAATGCGTGACATCAATCCTTTGTCTGCTCGCCATTGGATTGTTAGAAACACAAGAACTGTCAATAGGACTGGACAGCTGACTGGCTACAAGTTGGTACCTGGTTCAAATTGTTTGCCTTTGGCTGGTTCTGAAGCCAAGTTTCTGAGAAGAGCAACATTTTTGAAGCATAATCTCTGGGTGACACCATACACACATGATGAGAATTTTCCCGGGGGAGAGTTTCCTAATCAGAATCCCCGTGTTGGTGAGGGTTTGGCTTCATGGGTTAAGCAAAATCGATGTCTTGAAGAAACTGATATTGTTCTTTGGTATGTATTTGGGATCACACATGTTCCTCGTTTGGAAGACTGGCCTGTTATGCCAGTTGAGCATATTGGTTTTATGCTTCAGCCGCATGGGTTTTTTAACTGCTCTCCTGCAGTGGATGTACCGCCGGGTGCATGCGAGATGGATGTCAAGGAACATGAGGTTAAAGACAGTAGTGGAACTGGAGGTGGAGGAGCCAAGCCCATTCCAAATGGGTTGATAGCTTCCAAGCTTTGA

Network for GWHGAAZE017960

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02728.17	Cu_amine_oxidN3	124	227	2.30E-30
PF01179.21	Cu_amine_oxid	253	394	3.00E-56
PF01179.21	Cu_amine_oxid	396	638	3.50E-75

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00276	AOC3, AOC2, tynA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycine, serine and threonine metabolism	map00260
		Tyrosine metabolism	map00350
		Phenylalanine metabolism	map00360
		beta-Alanine metabolism	map00410
		Isoquinoline alkaloid biosynthesis	map00950
		Tropane, piperidine and pyridine alkaloid biosynthesis	map00960

Gene Ontology

GO term	Ontology	Name
GO:0009308	biological_process	amine metabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0005507	molecular_function	copper ion binding
GO:0008131	molecular_function	primary amine oxidase activity
GO:0048038	molecular_function	quinone binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.753
	SRR3591706	second leaf	1.991
	SRR3591707	mature leaf	0.813
	SRR3591708	Shoot apex	13.596
	SRR3591709	Stem	10.878
	SRR3591710	White floral bud	7.378
	SRR3591711	White flower	1.388
	SRR3591712	Green floral bud	23.145
	SRR3591713	Yellow flower	0.291
SRP173429	SRR8316895	Juvenile bud stage	9.682
	SRR8316896	Juvenile bud stage	11.011
	SRR8316897	Juvenile bud stage	5.911
	SRR8316894	Third green stage	6.307
	SRR8316900	Third green stage	20.141
	SRR8316901	Third green stage	17.371
	SRR8316898	Complete white stage	1.890
	SRR8316899	Complete white stage	14.189
	SRR8316903	Complete white stage	4.597
	SRR8316902	Silver flowering stage	0.392
	SRR8316904	Silver flowering stage	0.307
	SRR8316905	Silver flowering stage	0.116
	SRR8316906	Gold flowering stage	0.192
	SRR8316907	Gold flowering stage	0.248
	SRR8316908	Gold flowering stage	0.135
SRP132670	SRR6706286	Control	18.867
	SRR6706287	Light intensity 50%	20.645
	SRR6706288	Light intensity 20%	19.480
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.549
	CNS0095593	Slightly white alabastrum(diploid) 2	17.785
	CNS0095594	Slightly white alabastrum(diploid) 3	14.719
	CNS0095595	Whole white alabastrum(diploid) 2	17.383
	CNS0095596	Whole white alabastrum(diploid) 3	19.448
	CNS0095597	Whole white alabastrum(diploid) 4	20.524
	CNS0095598	Silvery flower (diploied) 1	1.412
	CNS0095599	Silvery flower (diploied) 2	1.959
	CNS0095600	Silvery flower (diploied) 3	1.195
	CNS0095601	Golden flower (diploid) 1	1.064
	CNS0095602	Golden flower (diploid) 2	0.982
	CNS0095603	Golden flower (diploid) 3	1.108
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.683
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.803
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.045
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.796
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.603
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.603
	CNS0095610	Silvery flower (tetraploid) 1	1.315
	CNS0095611	Silvery flower (tetraploid) 2	1.254
	CNS0095612	Silvery flower (tetraploid) 3	1.503
	CNS0095613	Golden flower (tetraploid) 1	0.162
	CNS0095614	Golden flower (tetraploid) 2	0.512
	CNS0095615	Golden flower (tetraploid) 3	0.214
CRA001975	CRR073297	Stem 1	19.971
	CRR073298	Stem 2	19.248
	CRR073299	Stem 3	13.794
	CRR073300	Leaf 1	36.481
	CRR073301	Leaf 2	29.090
	CRR073302	Leaf 3	16.541
	CRR073303	Juvenile bud 1	18.406
	CRR073304	Juvenile bud 2	9.384
	CRR073305	Juvenile bud 3	25.721
	CRR073306	Third green 1	2.412
	CRR073307	Third green 2	2.134
	CRR073308	Third green 3	1.537
	CRR073309	Second white 1	0.375
	CRR073310	Second white 2	0.442
	CRR073311	Second white 3	0.100
	CRR073312	Silver flowering 1	0.208
	CRR073313	Silver flowering 2	0.916
	CRR073314	Silver flowering 3	0.562
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.376
	CRR073317	Gold flowering 3	0.299
	CRR073318	Tawny withering 1	9.799
	CRR073319	Tawny withering 2	6.120
	CRR073320	Tawny withering 3	11.115