Gene detail

Detail information of GWHGAAZE017968

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009763059.1	0	PREDICTED: uncharacterized protein LOC104215021 [Nicotiana sylvestris]
trEMBL	tr\|F8RP79\|F8RP79_TOBAC	0	JOKA2 {ECO:0000313\|EMBL:AEI71779.1}
TAIR10	AT4G24690.1	8E-135	ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	12997623	13001155	+
GWHAAZE00000005	mRNA	12997623	13001155	+
GWHAAZE00000005	exon	12997623	12998656	+
GWHAAZE00000005	exon	12998733	12998850	+
GWHAAZE00000005	exon	12998934	12999188	+
GWHAAZE00000005	exon	12999341	12999490	+
GWHAAZE00000005	exon	13000036	13000536	+
GWHAAZE00000005	exon	13001057	13001155	+
GWHAAZE00000005	CDS	12997623	12998656	+
GWHAAZE00000005	CDS	12998733	12998850	+
GWHAAZE00000005	CDS	12998934	12999188	+
GWHAAZE00000005	CDS	12999341	12999490	+
GWHAAZE00000005	CDS	13000036	13000536	+
GWHAAZE00000005	CDS	13001057	13001155	+

Transcript Sequence
>GWHTAAZE017990 GTTAAATATGAAGAAACACTTAGGCGCTTCAATGCACGCGTCAGTAATGAAGAACTTGATCTTGACATGGATGGACTGAGAGACCAGGTTCATCGTCTCTTCCACTTTGCTCCCAATGCCGACATTATTCTGACGTACATCGACGAAGATGGTGACGTAGTGACACTTTCTGATGATGAAGATCTGCGTGATGTGATAAAACAGTCCTTGAATCCATTGAGGATAACTGTAAAGTTGAACACTGAGAAGAGTGATGATTGGTATGCTAGATCAAGTGGAAGTTCTACCCCCATCAAATCACCCCGAGTCCAGCATCCACTGAACACCAGTGTTTATGAAATCTTTAAATCTGTACCTGGACCTCTCTGTGAAGCAGTCTCAAAGCTACCCACGATCTTAGTTTCGAACCCTACATCCCCTCAACCAGTGGTTGCTGAGGTTGTTGACATCTTATCAAGGATGGGGTTGACTTACCTGAAACAAATTCTTGAGGTCCAACCTGGGACTGGATCAAGAATACACAGTGGGGCACAAGGAGTTCCCGTGGATGCGTCAGGGGTGAAAGATGAAAAAGGTCCCAATGTCGAGGGACAAACATCCAAGAAGTTGGCAAGTGCCAACTCTGAAGTACCAAACGAGAAGAGCAATGAACTGGACCATGGGAAAAAATGTGCCGAGACATCAAATTTGCCAACCACCGGCTCTGTGAATCTTAATGTTAGCCCCTCTCTTCATGACAACAAGGAGCAAGTTAAGAAGTTAGGTGAAGGTCCTTCAAGTGGGAAGTCAGATAAAAACAAGGAGGTGACAAAACGCCTACTCAGACGTGTTGGTTTGTCTACAACGCCTGAGCCCTGTTCGCGTGCTGCTTCTAGGAACGCCTCACGGTCGCATATTGTTCCCAATCTTAATGAATGTCCATTTTCAGGTTCCCTTTTGGAACATGGCGGCATTATCAACGTATTCCACAGGGGTGTTCGGTGTGATGGCTGTGGGGTTCATCCGATAACTGGACTTCGGTTCAAATCTAAAGTGAAAGAAGATTATGATCTGTGCAGCATCTGCTTTGCAGCAATGGGAAATGAAGCTGATTATATCAGAATGGACCGACCTGCAATTCACCGCCAATCTTTTAAGGGTTTAGATGCTTCTGATTCGAGGGTGCTGCCTCCAAAACTGCCAGCTGACGTAGTCAGAGGAAGTGGAATGAAACCGAGTCAACCCAAGTTAGACAGTCGCTTCGTTCAGGATGTTAATATTGTTGATGGTACTATCATGGCCCCATCAACCCCATTTACCAAGATCTGGCGGATGAAGAACAATGGAACTATTATGTGGCCCCGGGGTACCCAACTTCTCTGGATTGGGGGAGATAGATTAAGTGTGACACCTTATGTTGACTTAGAGATTCCAGCTGATGGGTTTCCTGTGGACAAGGAGGTTGACATCGCAGTTAATTTTAGTGCTCCTGAGCTCCCGGGCCGGTACATCTCATATTGGAGGATGGTCTCACCATCTGGCCAGAAGTTTGGACAACGTGTTTGGGTCCTCATTCAGGTTTATGCCTCTCTCAAGAACGCTTGGGGTGAAAGCCCCCGTGGGATTAACTTGAACTTGCCTCCGATTAACAGTGGCATTACAGGCCTGCAACATATTAATTTGAATGAGCCGTACAATTCTGATAGGGTTACAGAGTTGGTGCAGCCAATAGCTGATATGCACTCCAACAAGGACCTGGAGTTGAATTTCCCCATAAATGACACCTTGCTAGTTGGTGAAGCTAGCCGAGAGGCTTCTTCATTAATTCCATGCCCAATAATTGATAACTCTGACCTGGCACGTTCTACTGCTATTGATGGGAAATCGGCCGATGGAGAGGTAAATGGAAACAATAACGTTGAGCAGAGCCATTTGAGGGAGCTGGAGGAGATGGGTTTTAAGCAGGTTGATTTGAACAAGGAAATCTTGAGGATGAATGAGTACAACTTGGAGCAGTCAGTTGAGGATCTCTGTGATGTTGCTGAGTGGGACCCTATCCTTGAGGAGCTTAAAGAGATGGGTTTCTGTGATGATGAGACGAACAAGAGGCTGTTAAAGAAGAACAATGGGAGTATAAAGCGTGTGGTCATGGATCTTCTTGCTGGAGAGAAGCCATAG

Network for GWHGAAZE017968

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00564.25	PB1	20	78	2.60E-09
PF00569.18	ZZ	323	358	3.00E-09
PF16158.6	N_BRCA1_IG	419	520	2.70E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17987	NBR1	Mitophagy - animal	map04137

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	136.093
	SRR3591706	second leaf	67.259
	SRR3591707	mature leaf	73.527
	SRR3591708	Shoot apex	64.426
	SRR3591709	Stem	127.819
	SRR3591710	White floral bud	190.207
	SRR3591711	White flower	195.418
	SRR3591712	Green floral bud	127.773
	SRR3591713	Yellow flower	147.735
SRP173429	SRR8316895	Juvenile bud stage	138.308
	SRR8316896	Juvenile bud stage	196.774
	SRR8316897	Juvenile bud stage	51.459
	SRR8316894	Third green stage	53.212
	SRR8316900	Third green stage	138.947
	SRR8316901	Third green stage	149.495
	SRR8316898	Complete white stage	65.053
	SRR8316899	Complete white stage	223.214
	SRR8316903	Complete white stage	119.266
	SRR8316902	Silver flowering stage	78.141
	SRR8316904	Silver flowering stage	110.329
	SRR8316905	Silver flowering stage	60.369
	SRR8316906	Gold flowering stage	184.182
	SRR8316907	Gold flowering stage	170.836
	SRR8316908	Gold flowering stage	155.916
SRP132670	SRR6706286	Control	149.398
	SRR6706287	Light intensity 50%	152.659
	SRR6706288	Light intensity 20%	155.447
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	106.312
	CNS0095593	Slightly white alabastrum(diploid) 2	128.855
	CNS0095594	Slightly white alabastrum(diploid) 3	142.806
	CNS0095595	Whole white alabastrum(diploid) 2	119.016
	CNS0095596	Whole white alabastrum(diploid) 3	61.823
	CNS0095597	Whole white alabastrum(diploid) 4	92.209
	CNS0095598	Silvery flower (diploied) 1	206.837
	CNS0095599	Silvery flower (diploied) 2	182.105
	CNS0095600	Silvery flower (diploied) 3	216.175
	CNS0095601	Golden flower (diploid) 1	193.178
	CNS0095602	Golden flower (diploid) 2	233.984
	CNS0095603	Golden flower (diploid) 3	233.999
	CNS0095604	Slightly white alabastrum(tetraploid) 1	85.989
	CNS0095605	Slightly white alabastrum(tetraploid) 2	77.165
	CNS0095606	Slightly white alabastrum(tetraploid) 3	134.882
	CNS0095607	Whole white alabastrum(tetraploid) 1	62.214
	CNS0095608	Whole white alabastrum(tetraploid) 2	49.667
	CNS0095609	Whole white alabastrum(tetraploid) 3	110.950
	CNS0095610	Silvery flower (tetraploid) 1	165.233
	CNS0095611	Silvery flower (tetraploid) 2	198.641
	CNS0095612	Silvery flower (tetraploid) 3	194.896
	CNS0095613	Golden flower (tetraploid) 1	95.419
	CNS0095614	Golden flower (tetraploid) 2	142.679
	CNS0095615	Golden flower (tetraploid) 3	175.109
CRA001975	CRR073297	Stem 1	202.491
	CRR073298	Stem 2	184.378
	CRR073299	Stem 3	181.141
	CRR073300	Leaf 1	226.977
	CRR073301	Leaf 2	247.839
	CRR073302	Leaf 3	163.465
	CRR073303	Juvenile bud 1	202.357
	CRR073304	Juvenile bud 2	114.773
	CRR073305	Juvenile bud 3	287.442
	CRR073306	Third green 1	203.392
	CRR073307	Third green 2	143.900
	CRR073308	Third green 3	185.320
	CRR073309	Second white 1	206.037
	CRR073310	Second white 2	198.048
	CRR073311	Second white 3	229.651
	CRR073312	Silver flowering 1	208.966
	CRR073313	Silver flowering 2	191.449
	CRR073314	Silver flowering 3	164.254
	CRR073315	Gold flowering 1	98.563
	CRR073316	Gold flowering 2	150.891
	CRR073317	Gold flowering 3	110.992
	CRR073318	Tawny withering 1	148.048
	CRR073319	Tawny withering 2	136.156
	CRR073320	Tawny withering 3	111.924