Detail information of GWHGAAZE017972


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrP46280.1EFTU2_SOYBN0RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu; Flags: Precursor [Glycine max]
Swissprottr|P46280|EFTU2_SOYBN0Elongation factor Tu, chloroplastic (Precursor)
trEMBLtr|K7KMT9|K7KMT9_SOYBN0Elongation factor Tu {ECO:0000256|RuleBase:RU004061}
TAIR10AT4G20360.10RAB GTPase homolog E1B

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1303268413033970-
GWHAAZE00000005mRNA1303268413033970-
GWHAAZE00000005exon1303268413033970-
GWHAAZE00000005CDS1303268413033970-
Transcript Sequence

Network for GWHGAAZE017972

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00009.28GTP_EFTU292306.60E-55
PF03144.26GTP_EFTU_D22543227.70E-18
PF03143.18GTP_EFTU_D33274269.40E-40
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02358tuf, TUFM Plant-pathogen interaction map04626

Gene Ontology

GO term OntologyName
GO:0006414biological_processtranslational elongation
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding
GO:0003746molecular_functiontranslation elongation factor activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf210.469
SRR3591706second leaf647.572
SRR3591707mature leaf565.734
SRR3591708Shoot apex345.023
SRR3591709Stem104.878
SRR3591710White floral bud137.238
SRR3591711White flower215.130
SRR3591712Green floral bud131.685
SRR3591713Yellow flower204.618
SRP173429 SRR8316895Juvenile bud stage 122.668
SRR8316896Juvenile bud stage 116.083
SRR8316897Juvenile bud stage 69.362
SRR8316894Third green stage 50.291
SRR8316900Third green stage 160.515
SRR8316901Third green stage 149.730
SRR8316898Complete white stage 56.527
SRR8316899Complete white stage 148.851
SRR8316903Complete white stage 127.312
SRR8316902Silver flowering stage63.247
SRR8316904Silver flowering stage78.971
SRR8316905Silver flowering stage47.732
SRR8316906Gold flowering stage 116.373
SRR8316907Gold flowering stage 123.424
SRR8316908Gold flowering stage 130.979
SRP132670SRR6706286Control194.302
SRR6706287Light intensity 50%180.067
SRR6706288Light intensity 20%186.664
CNP0000432CNS0095592Slightly white alabastrum(diploid) 191.587
CNS0095593Slightly white alabastrum(diploid) 284.583
CNS0095594Slightly white alabastrum(diploid) 378.152
CNS0095595Whole white alabastrum(diploid) 278.680
CNS0095596Whole white alabastrum(diploid) 383.806
CNS0095597Whole white alabastrum(diploid) 456.733
CNS0095598Silvery flower (diploied) 1178.366
CNS0095599Silvery flower (diploied) 2168.110
CNS0095600Silvery flower (diploied) 3284.946
CNS0095601Golden flower (diploid) 1153.729
CNS0095602Golden flower (diploid) 2270.505
CNS0095603Golden flower (diploid) 3267.551
CNS0095604Slightly white alabastrum(tetraploid) 1114.129
CNS0095605Slightly white alabastrum(tetraploid) 2105.550
CNS0095606Slightly white alabastrum(tetraploid) 3219.911
CNS0095607Whole white alabastrum(tetraploid) 152.065
CNS0095608Whole white alabastrum(tetraploid) 262.160
CNS0095609Whole white alabastrum(tetraploid) 3197.421
CNS0095610Silvery flower (tetraploid) 1306.612
CNS0095611Silvery flower (tetraploid) 2365.801
CNS0095612Silvery flower (tetraploid) 3192.990
CNS0095613Golden flower (tetraploid) 1177.767
CNS0095614Golden flower (tetraploid) 2262.186
CNS0095615Golden flower (tetraploid) 3245.817
CRA001975CRR073297Stem 1198.889
CRR073298Stem 2189.514
CRR073299Stem 3234.034
CRR073300Leaf 1130.593
CRR073301Leaf 2151.241
CRR073302Leaf 3113.526
CRR073303Juvenile bud 1157.465
CRR073304Juvenile bud 2137.393
CRR073305Juvenile bud 3209.024
CRR073306Third green 182.955
CRR073307Third green 264.634
CRR073308Third green 377.972
CRR073309Second white 1140.489
CRR073310Second white 281.196
CRR073311Second white 368.852
CRR073312Silver flowering 161.256
CRR073313Silver flowering 279.276
CRR073314Silver flowering 363.443
CRR073315Gold flowering 1606.429
CRR073316Gold flowering 2730.350
CRR073317Gold flowering 3870.722
CRR073318Tawny withering 1104.741
CRR073319Tawny withering 287.222
CRR073320Tawny withering 3102.622