Gene detail

Detail information of GWHGAAZE017979

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP12706.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9FGS4\|NADA_ARATH	Quinolinate synthase, chloroplastic (Precursor)
trEMBL	tr\|A0A068UWE9\|A0A068UWE9_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_70 {ECO:0000313\|EMBL:CDP12706.1}
TAIR10	AT5G50210.1	quinolinate synthase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	13106025	13110818	-
GWHAAZE00000005	mRNA	13106025	13110818	-
GWHAAZE00000005	exon	13106025	13106099	-
GWHAAZE00000005	exon	13106194	13106355	-
GWHAAZE00000005	exon	13106926	13107441	-
GWHAAZE00000005	exon	13108047	13108226	-
GWHAAZE00000005	exon	13108343	13108583	-
GWHAAZE00000005	exon	13109034	13109058	-
GWHAAZE00000005	exon	13109242	13109566	-
GWHAAZE00000005	exon	13110279	13110818	-
GWHAAZE00000005	CDS	13110279	13110818	-
GWHAAZE00000005	CDS	13109242	13109566	-
GWHAAZE00000005	CDS	13109034	13109058	-
GWHAAZE00000005	CDS	13108343	13108583	-
GWHAAZE00000005	CDS	13108047	13108226	-
GWHAAZE00000005	CDS	13106926	13107441	-
GWHAAZE00000005	CDS	13106194	13106355	-
GWHAAZE00000005	CDS	13106025	13106099	-

Transcript Sequence
>GWHTAAZE018001 GTAACTTCCCCTCCCTCACCAACTTCAAATCTCGCCGTTACCAAGCTCCACCGCCTCATCCTGGAATTCCAATCCCTCCCCGAGCCAATCGACCGCGTTAAACGCTTGCTAGACTACGCGGCTAAGCTCCCGCCGTTGGATGATTCGTTGAAGGTCATCGAGAATCGAGTCATGGGGTGTACGGCTCAGGTCTGGTTGGATGCGACTATGGATAAGGACGGTAAGATGAGGTTTAGGGCGGATAGTGATTCCGAGATCACTAAGGGGTTCTGTTATTGTTTGCTTAGCGTGGTCGATGGGGCGGGCCCCGAGGAGGTCTTGCGGCTGAAGACGGAGGATTTGGAGCATTTGAGTGTTAGTGGTTTAAATGGGAAGGCTAATTCTAGGGTTAATACGTGGCATAATGTTTTGGTTAGTATGAAGAAGAGGACTAAAGCTCTGGTGGCGGAGCGAGAGGGGAAGGTGCAGGGGGAGGCTTTTCCTTCTTTGGTTGTTACGGCGGATGGGATACATGCGCAGGGTAGTTACGCTGAAGCTCAGGCAAGATTTTTGTTCCCTGAGGACTTGAAGGTTCAGGAACTAGCCGGTTTGCTAAAGGAGAGGAAAATTGGTGTTGTTGCACATTTCTACATGGACCCCGAGGTTCAGGGTGTTTTAACTGCTGCGCAAAAGCTGTGGCCTCACATCTATATATCGGATTCACTGGTTATGGCAGATATGGCTGTCAAGATGGCAAAAGAGGGATGCCAATACATTTCTGTTTTAGGAGTAGATTTTATGTCAGAAAATGTGCGTGCAATCCTTGATCAGGCTGGCTTTGCAGACGTAAGCTTCTCTCATATCTTCTTGGTTTTCAATATAAGCAGGGTGGCTATGGTGTGGGCTGCAGGACTGGGCATAATTGTTGTGCAGGTTGGTGTGTACAGAATGTCCAATGAACGCATTGGCTGCACTTTGGCTGATGCAGCAGCTACTCCTGCATATATGGATTATCTGGCTGAAGCTTCTACTTCCTCGCCTTCTTTGCATGTTGTCTACATAAATACTTCACTGGAGACCAAAGCAAATGCACATGAACTTGTGCCGACAATAACTTGTACTTCTTCTAATGTTGTACAAACCATCTTGCAGGCATTTGCTGAAGTACCAAACTTGAAAATATGGTATGGTCCTGATGCCTACATGGGCGCAAACATTATGGAATTGTTCCAGCAGATGACTGTAATGACTGATGAAGAAATTGCTGAGATACATCCGGCACACAACAGAGCCTCGATTAAATCGTTGCTGCCTCGTCTGCACTATTATCAGGATGGAACATGCGTCGTTCATCACCTCTTTGGGCATGAAGTCGTGGAGAGAATAAATGAGATGTATTCTGACGCATTTCTTACTGCTCATTTTGAGGTCCCCGGTGAAATGTTCTCTTTGGCTATGGAAGCAAAAAAAAGAGGGATGGGGGTAGTTGGTTCTACCCAAAATATCTTAGATTTTATTAGGCAGAGGCTACAAGAGGCATTAGATAGAAATGTAGAAGACCATCTTCAGTTTGTATTAGGAACAGAGTCGGGAATGGTGACTTCAATTGTGGCTGCGGTTCGCAGATTGTTAGGTTCTGCAAAGTCCTCTTCTATGGGATCTAAAGTTAGTGTTGAGATAGTCTTTCCTGTTTCATCGGAGTCCGTGACAAGAACCTCAAAGAGTTCGTCCCTCGGCCTAAGTTTGGGTGAAGTAGGAGATTTCATGCAAGTCCCAATTATACCTGGAGTTGCAAGTGGGGAGGGGTGTTCTCTTCATGGCGGCTGTGCATCGTGTCCATACATGAAGATGAATTCTCTGAGCTCGCTTCTAAAAGTTTGTCATAACCTGCCGAATGAGAAAGATAACCTTTCAGCCTACGAAGCTGGACGGTTCATTTTGCGGACCCCAAATGGAAAACTAATTGCAGATGTTGGTTGTGAACCCATTCTTCACATGAGACACTTTCAGGCAAATAAGAAACTGCCAGAGAAGCTTGTAAATCAAATCCTTCATCCTCACAGCAAAGATAGAACATTGTTGTTA

Network for GWHGAAZE017979

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02657.16	SufE	22	142	8.00E-28
PF02445.17	NadA	194	266	1.70E-06
PF02445.17	NadA	310	532	1.00E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03517	nadA	Metabolic pathways	map01100
K03517	nadA	Nicotinate and nicotinamide metabolism	map00760

Gene Ontology

GO term	Ontology	Name
GO:0009435	biological_process	NAD biosynthetic process
GO:0008987	molecular_function	quinolinate synthetase A activity
GO:0051539	molecular_function	4 iron, 4 sulfur cluster binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	100.219
	SRR3591706	second leaf	31.837
	SRR3591707	mature leaf	38.614
	SRR3591708	Shoot apex	60.106
	SRR3591709	Stem	82.484
	SRR3591710	White floral bud	42.730
	SRR3591711	White flower	72.481
	SRR3591712	Green floral bud	30.225
	SRR3591713	Yellow flower	73.390
SRP173429	SRR8316895	Juvenile bud stage	48.771
	SRR8316896	Juvenile bud stage	47.670
	SRR8316897	Juvenile bud stage	45.103
	SRR8316894	Third green stage	10.599
	SRR8316900	Third green stage	29.560
	SRR8316901	Third green stage	38.129
	SRR8316898	Complete white stage	9.574
	SRR8316899	Complete white stage	53.804
	SRR8316903	Complete white stage	19.663
	SRR8316902	Silver flowering stage	24.700
	SRR8316904	Silver flowering stage	29.955
	SRR8316905	Silver flowering stage	15.942
	SRR8316906	Gold flowering stage	58.047
	SRR8316907	Gold flowering stage	46.144
	SRR8316908	Gold flowering stage	57.519
SRP132670	SRR6706286	Control	26.283
	SRR6706287	Light intensity 50%	33.036
	SRR6706288	Light intensity 20%	31.652
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	40.922
	CNS0095593	Slightly white alabastrum(diploid) 2	40.162
	CNS0095594	Slightly white alabastrum(diploid) 3	45.294
	CNS0095595	Whole white alabastrum(diploid) 2	34.401
	CNS0095596	Whole white alabastrum(diploid) 3	16.182
	CNS0095597	Whole white alabastrum(diploid) 4	27.233
	CNS0095598	Silvery flower (diploied) 1	57.843
	CNS0095599	Silvery flower (diploied) 2	53.076
	CNS0095600	Silvery flower (diploied) 3	67.900
	CNS0095601	Golden flower (diploid) 1	83.335
	CNS0095602	Golden flower (diploid) 2	93.359
	CNS0095603	Golden flower (diploid) 3	89.790
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.195
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.690
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.918
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.614
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.216
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.383
	CNS0095610	Silvery flower (tetraploid) 1	67.695
	CNS0095611	Silvery flower (tetraploid) 2	51.963
	CNS0095612	Silvery flower (tetraploid) 3	36.355
	CNS0095613	Golden flower (tetraploid) 1	63.098
	CNS0095614	Golden flower (tetraploid) 2	74.808
	CNS0095615	Golden flower (tetraploid) 3	66.767
CRA001975	CRR073297	Stem 1	31.436
	CRR073298	Stem 2	32.705
	CRR073299	Stem 3	26.251
	CRR073300	Leaf 1	37.598
	CRR073301	Leaf 2	37.573
	CRR073302	Leaf 3	25.275
	CRR073303	Juvenile bud 1	33.527
	CRR073304	Juvenile bud 2	23.581
	CRR073305	Juvenile bud 3	36.412
	CRR073306	Third green 1	32.385
	CRR073307	Third green 2	25.774
	CRR073308	Third green 3	36.167
	CRR073309	Second white 1	30.829
	CRR073310	Second white 2	37.691
	CRR073311	Second white 3	42.736
	CRR073312	Silver flowering 1	53.391
	CRR073313	Silver flowering 2	49.952
	CRR073314	Silver flowering 3	42.264
	CRR073315	Gold flowering 1	31.022
	CRR073316	Gold flowering 2	52.717
	CRR073317	Gold flowering 3	31.449
	CRR073318	Tawny withering 1	54.366
	CRR073319	Tawny withering 2	63.745
	CRR073320	Tawny withering 3	68.693