Gene detail

Detail information of GWHGAAZE017996

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP15093.1	1.1272E-141	unnamed protein product [Coffea canephora]
Swissprot	tr\|B7FNU7\|LIS1_PHATC	3E-12	Lissencephaly-1 homolog {ECO:0000255\|HAMAP-Rule:MF_03141}
trEMBL	tr\|A0A068V5D1\|A0A068V5D1_COFCA	4E-142	Coffea canephora DH200=94 genomic scaffold, scaffold_94 {ECO:0000313\|EMBL:CDP15093.1}
TAIR10	AT1G24530.1	4E-90	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	13341065	13342213	-
GWHAAZE00000005	mRNA	13341065	13342213	-
GWHAAZE00000005	exon	13341065	13342213	-
GWHAAZE00000005	CDS	13341065	13342213	-

Transcript Sequence
>GWHTAAZE018018 GAAACCGATTCCAGTAGCCCCGATACTCATCATCAATCTCCAAAACCCTTCTCCTCCACTTCTCACATTTACCATACTTCTCTCAAAACCCTAACTCCCCAAACTATCAGCTGCCTTGCTGTCCACAACAACTCCCTGTACGCCGCTTCCAACAACCAAATCAACGTCTTCGATTTAACCAACCACACCCTCACACATACTTTCCACTCTAATGACTCGTCTTCAGGTTTAGTTAAGTCCGTTACTTTTGGAAACGACAAAATATTCACTGCTCATCAGGACTGTAAAATCAGAGTCTGGCAATTAACTGACTCTAAACGACACCGTTTAGTCTCCACGCTTCCCACTGTTAAAGACCGTTTGTACCGTTCCGTTTCACAGAAGAACTACGTCCAGGTCCGCCGTCACAAACAACAGCTTTGGATCCAACACTCTGACACTGTTTCCGGATTGGCCGTTAACGACTGTTTAAATTTGATGTATTCCGTTTCTTGGGATAAGTGCCTTAAAATCTGGAGAATGTCAGACTTGAAATGTTTAGAATCGATTAAAGCTCATTCTGACGCCGTTAACGCCGTCGTTGGTTTCATTGACGGCACAGTTTACACGGCGTCAGCTGACGGGAGGATAAATGTTTGGGGGAGAAATCACGGTGACGGAAAACACGGACTGTTAACTACGTTAGAGAAGCACAAGTCTCCTGTGAATGCGCTTGCATTGAGTAGTGACGGATCGGCGTTGTTTTCAGGCGGTTGTGACCATGCGATCTTGGTGTGGGAGAAGGATGATCAAGATGGTGATCAAATGCTGCTGAAGTGGACGCTGAGTGGGCATGCGGGTGCCGTGCTGTGCTTGATCTACGTGGATGGTTGGTTGATAAGTGGGTCATCTGATCGGACGGTGAGGATTTGGACACGTCGATCCCAGTGTGGGGGCTACTGTTGTTATGCGGTCCTAGAAGGGCACTTGAAACCTGTTAAGTCGTTGGCGGCAGTTACTATTAGTAGTAGTGCAGGAGGAGACGGTGTCGTTTCGGTTTTCAGTGGCAGTCTTGATGGGGAGATTAAACTTTGGCTGGTGAATTATAAATCAAGTTGGGAGAATGGATGCTTACTTTCGGATTGTCGGAAGGTGGGTTCATGCTCATAG

Network for GWHGAAZE017996

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	178	213	0.24
PF00400.33	WD40	225	259	0.00061
PF00400.33	WD40	273	304	0.0004
PF00400.33	WD40	315	358	0.032

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.748
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.033
	SRR3591708	Shoot apex	0.125
	SRR3591709	Stem	2.147
	SRR3591710	White floral bud	0.904
	SRR3591711	White flower	0.104
	SRR3591712	Green floral bud	1.068
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.043
	SRR8316896	Juvenile bud stage	0.201
	SRR8316897	Juvenile bud stage	0.381
	SRR8316894	Third green stage	0.278
	SRR8316900	Third green stage	0.164
	SRR8316901	Third green stage	0.412
	SRR8316898	Complete white stage	0.987
	SRR8316899	Complete white stage	4.156
	SRR8316903	Complete white stage	0.966
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.119
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	1.110
	SRR6706287	Light intensity 50%	0.930
	SRR6706288	Light intensity 20%	0.841
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.873
	CNS0095593	Slightly white alabastrum(diploid) 2	0.329
	CNS0095594	Slightly white alabastrum(diploid) 3	0.034
	CNS0095595	Whole white alabastrum(diploid) 2	0.291
	CNS0095596	Whole white alabastrum(diploid) 3	0.149
	CNS0095597	Whole white alabastrum(diploid) 4	0.173
	CNS0095598	Silvery flower (diploied) 1	0.389
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.129
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.060
	CNS0095603	Golden flower (diploid) 3	0.022
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.414
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.260
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.876
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.388
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.386
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.645
	CNS0095610	Silvery flower (tetraploid) 1	0.539
	CNS0095611	Silvery flower (tetraploid) 2	0.169
	CNS0095612	Silvery flower (tetraploid) 3	0.149
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.316
	CRR073298	Stem 2	0.703
	CRR073299	Stem 3	1.606
	CRR073300	Leaf 1	1.749
	CRR073301	Leaf 2	0.771
	CRR073302	Leaf 3	1.645
	CRR073303	Juvenile bud 1	2.827
	CRR073304	Juvenile bud 2	9.282
	CRR073305	Juvenile bud 3	4.396
	CRR073306	Third green 1	0.115
	CRR073307	Third green 2	0.155
	CRR073308	Third green 3	0.040
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.080
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.095
	CRR073318	Tawny withering 1	4.268
	CRR073319	Tawny withering 2	5.886
	CRR073320	Tawny withering 3	6.471