Gene detail

Detail information of GWHGAAZE018003

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011072877.1	4.2873E-134	PREDICTED: uncharacterized protein LOC105157992 [Sesamum indicum]
trEMBL	tr\|A0A022QRB9\|A0A022QRB9_ERYGU	1E-131	Uncharacterized protein {ECO:0000313\|EMBL:EYU31282.1} (Fragment)
TAIR10	AT1G74120.1	1E-96	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	13414686	13415964	+
GWHAAZE00000005	mRNA	13414686	13415964	+
GWHAAZE00000005	exon	13415952	13415964	+
GWHAAZE00000005	exon	13414686	13415697	+
GWHAAZE00000005	CDS	13414686	13415618	+
GWHAAZE00000005	three_prime_UTR	13415619	13415697	+
GWHAAZE00000005	three_prime_UTR	13415952	13415964	+

Transcript Sequence
>GWHTAAZE018025 ATTTCTAGGAAGTTTGATTTAGACCCAGAGGATCTTTCTAAGTGTGTACAGCGGTTGAAGGGTTTTGGGTTTAGTGATGTCACTGTTACTAGGATTTTAGAGGTGTTTCCCACTGTGATTATGATGAGGGAGGTGAGAATTTATCATATAGTGAAATTCTTGCAGGGAACTGGAATTCATAAGAGCGAAATTGACTGGGTATTTAATAAGTTTCCAGGTGTTTTGGCATTCGGGGTAGAGAGTAAGTTGAAGCCGTTGCTTGATGAATTTGAAGACACTGTTTATACCTTGGACGTGGTTAGGAAAGAGATTCTTCAAGATCCTAGGATTCTTGGGTTGGAAGTTGGGGAGCTTACTCAGATTTTGAAAATGTTGAGGAGTTTGAAGTGTCGGGTACCAATTAAAGAACAGATATTTCACGAGGGACCTTTTAGGGCCGGGTATGAAGTGAAATTGAGGATTGATTGCTTGCGCAAATACGGATTGATATATACGGAGGCATTTACCGTGCTTTGGAAAGAACCGAGAGCAATTCTCTATGGCACAAAGGATATTGAGAAGAAGATGGAATTTTTAGTAAATGTGATGAATTTTGATGTTCAGTGGCTGATTGAAGTTCCAGAGTATCTAGGAATGAATTTCGAGAAACAAATTGTTCCTCGACACAATGTTATAGAGTATTTGAGGTCAAAAGGTGGGCTAGGAGATGAGGTGGGTTTGAGATCTTTGATTAAGCCTAGTAGACATAGATTTTATAATCTTTATGTGAAACCATACCCAGAGTGTGAAAAAATATATGGGAAGTTTGCAGTAAATGTTGAAGGCAGGAGGAAGCATCCAGTAGGAATGTGGAAGCTTTTCAAGTCACAAAAGTATTCTGATTCCAAAGAAGATGTGGAGAACATAAAGTCTTTTGTGGAATGTTTGGTTTAGTAGAGAGTTGCGTGCATTTATCCTTCCAAGTCTATGTAACAACTGAGACATGGTATTCAATCAGCTCACCCATTTTCAGGAATACTATTGCA

Network for GWHGAAZE018003

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	9	120	1.20E-09
PF02536.15	mTERF	52	175	4.80E-08
PF02536.15	mTERF	152	251	4.80E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.950
	SRR3591706	second leaf	1.364
	SRR3591707	mature leaf	2.189
	SRR3591708	Shoot apex	2.049
	SRR3591709	Stem	1.290
	SRR3591710	White floral bud	3.776
	SRR3591711	White flower	3.191
	SRR3591712	Green floral bud	2.617
	SRR3591713	Yellow flower	2.748
SRP173429	SRR8316895	Juvenile bud stage	2.211
	SRR8316896	Juvenile bud stage	2.342
	SRR8316897	Juvenile bud stage	0.246
	SRR8316894	Third green stage	0.770
	SRR8316900	Third green stage	2.990
	SRR8316901	Third green stage	2.700
	SRR8316898	Complete white stage	1.758
	SRR8316899	Complete white stage	3.856
	SRR8316903	Complete white stage	1.460
	SRR8316902	Silver flowering stage	0.869
	SRR8316904	Silver flowering stage	2.262
	SRR8316905	Silver flowering stage	0.786
	SRR8316906	Gold flowering stage	3.057
	SRR8316907	Gold flowering stage	1.894
	SRR8316908	Gold flowering stage	2.640
SRP132670	SRR6706286	Control	0.410
	SRR6706287	Light intensity 50%	0.433
	SRR6706288	Light intensity 20%	0.379
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.162
	CNS0095593	Slightly white alabastrum(diploid) 2	1.748
	CNS0095594	Slightly white alabastrum(diploid) 3	1.570
	CNS0095595	Whole white alabastrum(diploid) 2	0.929
	CNS0095596	Whole white alabastrum(diploid) 3	1.739
	CNS0095597	Whole white alabastrum(diploid) 4	1.216
	CNS0095598	Silvery flower (diploied) 1	2.304
	CNS0095599	Silvery flower (diploied) 2	0.993
	CNS0095600	Silvery flower (diploied) 3	4.123
	CNS0095601	Golden flower (diploid) 1	1.999
	CNS0095602	Golden flower (diploid) 2	3.170
	CNS0095603	Golden flower (diploid) 3	2.626
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.964
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.205
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.161
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.550
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.424
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.969
	CNS0095610	Silvery flower (tetraploid) 1	3.695
	CNS0095611	Silvery flower (tetraploid) 2	3.446
	CNS0095612	Silvery flower (tetraploid) 3	3.776
	CNS0095613	Golden flower (tetraploid) 1	2.408
	CNS0095614	Golden flower (tetraploid) 2	4.436
	CNS0095615	Golden flower (tetraploid) 3	2.744
CRA001975	CRR073297	Stem 1	1.106
	CRR073298	Stem 2	2.022
	CRR073299	Stem 3	0.082
	CRR073300	Leaf 1	0.999
	CRR073301	Leaf 2	1.021
	CRR073302	Leaf 3	0.547
	CRR073303	Juvenile bud 1	0.477
	CRR073304	Juvenile bud 2	0.978
	CRR073305	Juvenile bud 3	0.433
	CRR073306	Third green 1	0.126
	CRR073307	Third green 2	0.003
	CRR073308	Third green 3	0.207
	CRR073309	Second white 1	0.176
	CRR073310	Second white 2	0.560
	CRR073311	Second white 3	0.200
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.119
	CRR073316	Gold flowering 2	1.537
	CRR073317	Gold flowering 3	0.827
	CRR073318	Tawny withering 1	1.240
	CRR073319	Tawny withering 2	0.837
	CRR073320	Tawny withering 3	0.321