Gene detail

Detail information of GWHGAAZE018005

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010260472.1	PREDICTED: cytochrome P450 78A5 [Nelumbo nucifera]
Swissprot	tr\|Q9LMX7\|C78A5_ARATH	Cytochrome P450 78A5
trEMBL	tr\|A0A068V3X4\|A0A068V3X4_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_97 {ECO:0000313\|EMBL:CDP15252.1}
TAIR10	AT1G74110.1	cytochrome P450, family 78, subfamily A, polypeptide 10

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	13461694	13463932	+
GWHAAZE00000005	mRNA	13461694	13463932	+
GWHAAZE00000005	exon	13461694	13462650	+
GWHAAZE00000005	exon	13463324	13463932	+
GWHAAZE00000005	CDS	13461694	13462650	+
GWHAAZE00000005	CDS	13463324	13463932	+

Transcript Sequence
>GWHTAAZE018027 ATGTCATCGGAATACTACTCTCCGTTCATTCCCTCTGTTCTCAGCTGCGAACTGTCTGTCTTTCTCTTACTTTTTATTGCCGTTTTCGCCTTCTGGCTAACCCCCGGAGGTCTGGCTTGGGCTCTCTCCAGAGCCCGAAGCCGAACCACCGCCATTCCCGGACCCTCCGGTCTTCCCTTTATAGGCTTAGTCTTTTCTTTCACCGGCTCTTTGACCCACAGAGTACTGTCAAAGCTTGCCAATAGCTTGAATGCTATGCCATTAATGGCTTTCTCAGTGGGGTTGACCCGTTTCATCATTTCAAGCCACCCGGATACTGCCAAAGAGATTTTGAATAGCTCTGCTTTTGCCGATCGGCCTATTAAGGAGTCTGCCTATGAGCTGTTGTTTAACAGGGCTATGGGTTTTGCTCCTTATGGGGAGTATTGGAGGAATCTGAGGAGAATCTCGTCCACCCATTTGTTTAGTCCGAAGAGGGTTTCGGGTTTCGGGGAGTTTAGGAGGAACATTGGGTTGAAAATGGTGAGTGAAATCTCTAGTTTGATGGAGAAGAATGGTGAGGTTGAGGTTAAGAAGGTGTTACATTTTGGGTCTTTGAACAATGTGATGATGAGCGTGTTTGGCAAGTGTTACGATTTTAGTAATGGTGGGGATGGGGTTGAGCTTGAGGGTTTGGTGCGTGAAGGGTATGAGTTGCTTGGGATATTTAACTGGACTGATCATTTTCCAGTTGTGGGGTGGTTTGATTTTCAAGGAGTGAGGAAAAGGTGCAGGGAGTTGGCGGGCAAGGTGAATGTTTTTGTTGGGAAGATTATTGAGGAACATAGGGTGAAAAGGGCTGAGAATGGGCTACTTGCTGGTGGTTTTGATGAGAGCTCTGGTGATTTTGTTCATGTGTTGCTTGATTTGGAGAAGGAGAACAGGCTCAGTGACTCTGATATGATTGCTGTTCTATGGGAAATGATCTTCAGGGGGACTGATACAGTGGCAATCCTCCTAGAGTGGACTATTGCAAGAATGATTCTTCACCCAGATATTCAAGCCAGAGCTCAAGCTGAAATCGACAATGTTGTTGGATCAACCCGATCCGTATCGGATTCTGACCTCCCCAACCTACCCTACCTCCAAGCCATTGTGAAAGAGACTCTCAGGGTGCACCCTCCCGGCCCGCTCCTGTCGTGGGCCAGGTTATCCATCCACGATACCCGTGTGGGTGACCACTTCATTCCGGCGGGGACTACGGCTATGGTGAACATGTGGGCCATAACCCACGACGGCACGGTCTGGGCGCAGTCGGAGAAGTTCATGCCGGAAAGGTTCTTGGAGGAGGAGGTTAGCATAATGGGGTCTGACCTTAGGTTGGCCCCGTTTGGTGCTGGGAGGAGGGTATGCCCCGGTAAGGCCATGGGTTTAGCCACTGTGCAGCTTTGGTTAGCCCAGTTGCTTCAGGGGTTCAAGTGGGTTTCTGGTTCTGGTAATGGTGGGGTGGACTTGTCTGAGTGCTTGAAACTGTCCTTGGAAATGAAGCAGCCATTGGTGTGCAAGGCTGTTGCTAGGGTTTATTGA

Network for GWHGAAZE018005

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	53	489	1.60E-83

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.688
	SRR3591706	second leaf	0.445
	SRR3591707	mature leaf	11.687
	SRR3591708	Shoot apex	6.513
	SRR3591709	Stem	9.522
	SRR3591710	White floral bud	0.809
	SRR3591711	White flower	0.151
	SRR3591712	Green floral bud	1.041
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.370
	SRR8316896	Juvenile bud stage	0.810
	SRR8316897	Juvenile bud stage	0.170
	SRR8316894	Third green stage	0.108
	SRR8316900	Third green stage	0.409
	SRR8316901	Third green stage	0.605
	SRR8316898	Complete white stage	0.004
	SRR8316899	Complete white stage	1.232
	SRR8316903	Complete white stage	0.217
	SRR8316902	Silver flowering stage	0.035
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.621
	SRR6706287	Light intensity 50%	0.448
	SRR6706288	Light intensity 20%	0.447
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.320
	CNS0095593	Slightly white alabastrum(diploid) 2	0.283
	CNS0095594	Slightly white alabastrum(diploid) 3	0.221
	CNS0095595	Whole white alabastrum(diploid) 2	0.096
	CNS0095596	Whole white alabastrum(diploid) 3	0.089
	CNS0095597	Whole white alabastrum(diploid) 4	0.091
	CNS0095598	Silvery flower (diploied) 1	0.570
	CNS0095599	Silvery flower (diploied) 2	0.082
	CNS0095600	Silvery flower (diploied) 3	0.105
	CNS0095601	Golden flower (diploid) 1	0.077
	CNS0095602	Golden flower (diploid) 2	0.071
	CNS0095603	Golden flower (diploid) 3	0.047
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.814
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.154
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.232
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.243
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.471
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.051
	CNS0095610	Silvery flower (tetraploid) 1	1.798
	CNS0095611	Silvery flower (tetraploid) 2	3.007
	CNS0095612	Silvery flower (tetraploid) 3	0.576
	CNS0095613	Golden flower (tetraploid) 1	0.093
	CNS0095614	Golden flower (tetraploid) 2	0.077
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.376
	CRR073298	Stem 2	1.390
	CRR073299	Stem 3	1.340
	CRR073300	Leaf 1	0.196
	CRR073301	Leaf 2	0.054
	CRR073302	Leaf 3	0.026
	CRR073303	Juvenile bud 1	1.090
	CRR073304	Juvenile bud 2	0.731
	CRR073305	Juvenile bud 3	0.108
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.032
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.838
	CRR073316	Gold flowering 2	1.544
	CRR073317	Gold flowering 3	1.944
	CRR073318	Tawny withering 1	20.952
	CRR073319	Tawny withering 2	38.190
	CRR073320	Tawny withering 3	15.609