Gene detail

Detail information of GWHGAAZE018023

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002273412.2	0	PREDICTED: LOW QUALITY PROTEIN: WD repeat and HMG-box DNA-binding protein 1 [Vitis vinifera]
Swissprot	tr\|Q8W1K8\|MUT11_CHLRE	6E-18	Protein Mut11
trEMBL	tr\|F6GTF5\|F6GTF5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43164.1}
TAIR10	AT3G42660.1	0	transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	13791872	13797622	+
GWHAAZE00000005	mRNA	13791872	13797622	+
GWHAAZE00000005	exon	13791872	13792145	+
GWHAAZE00000005	exon	13793261	13794372	+
GWHAAZE00000005	exon	13794519	13794695	+
GWHAAZE00000005	exon	13794864	13794977	+
GWHAAZE00000005	exon	13795113	13795217	+
GWHAAZE00000005	exon	13795403	13795537	+
GWHAAZE00000005	exon	13795623	13795678	+
GWHAAZE00000005	exon	13795760	13795862	+
GWHAAZE00000005	exon	13795939	13796055	+
GWHAAZE00000005	exon	13796252	13796378	+
GWHAAZE00000005	exon	13796940	13797070	+
GWHAAZE00000005	exon	13797182	13797622	+
GWHAAZE00000005	CDS	13791872	13792145	+
GWHAAZE00000005	CDS	13793261	13794372	+
GWHAAZE00000005	CDS	13794519	13794695	+
GWHAAZE00000005	CDS	13794864	13794977	+
GWHAAZE00000005	CDS	13795113	13795217	+
GWHAAZE00000005	CDS	13795403	13795537	+
GWHAAZE00000005	CDS	13795623	13795678	+
GWHAAZE00000005	CDS	13795760	13795862	+
GWHAAZE00000005	CDS	13795939	13796055	+
GWHAAZE00000005	CDS	13796252	13796378	+
GWHAAZE00000005	CDS	13796940	13797070	+
GWHAAZE00000005	CDS	13797182	13797622	+

Transcript Sequence
>GWHTAAZE018045 ATGAAAATTCGATCAATGAAGCTTCGCGAAGCCCACAAGAATAACGGCGTTGGCTCCTTCTGTTCTATTCTGTGGGACCTCCAAGGTCAGTACATCGTCACCGCCTCATCTTCCGACCCTTCGATCTGTATCCACGACGCTCTATTACCTTCAATTTCCCCAAAATTACTTCGAAATCACAGAGATGGTGTTACCGCTTTGGCTCTTAGCCCTAATTCAACCTGCTTAGCTTCTGGATCCATGGATCACTCTGTCAAGCTCTACAAATTTCCCGGCGGAGAATTTCAGACCAATATCACCAGATTTACATTACCAATCCGTGCTCTGGCTTTTAATAAATCTGGTACCATGCTGGCTGCTGCTGGTGATGACGAGGGTATTAAGCTGATCAATACGATCGATGGCTCAATTGCTAGGGTTTTGAAAGGGCATAGAGGCTCTGTCACTGGCTTAGCTTTTGATCCTAAAAGTGAGTACATGGCCTCAGTTGATTCAGTTGGGACTGTCATATTTTGGGAACTCCATTCTGGAGTAACAGTTCATACTCTTAAAGGTATAGCTCCTGATACTGGATCTGACTTTTCGGTTCTGAATACAATTAACTGGAGTCCAGATGGGGAGATGTTAGCTGTCCCGGGTTTGAAAAATGATTTAGTGATGTATGATAGAGACACAGCTGAAAAGCTCTTTTCACTTAGAGGCGATCACACACAGCCCATTTGTTACCTTTCTTGGTCACCTAATGGGAAATACATGGCCACTTCTGGTTCAGATAATCAGGTTCTGATCTGGGACGTTGATCAGAGGCAAGATATTGATAGGCAGAAATTTGATGAGAGAATATCTTGCATGGCATGGAAGCCACATGGGAATGCATTGGTTGTCATTGATATCATGGGGAAATATGGGGTGTGGGACTCGACTATTCCATCATCAATGAAATCTCCTACAGAAGGTATTCCTAGTTCGCAATCAAAGAACGGAAATGGGCTTCTCTTATTTGATGAAGATGATCACAAAGATCCTAGTACATCTGGTAGTTTAAGTGATATTGGTGAAGATACCTCTTTTAAGTCTGAATTACCCAACAGAAAAAGATTACGCAAGCAGTCCAAATATGACGAGGACTCAGATGAAGACATTAGTAATGAGTTGAGTTTGCTTCCAAAGACTAGGGCTTGCAAAAAAGCTTCTCGTGGTCCCAAGGGAAGCTTTGATAATAGGAAGGAGGGAGTAGGAAGCACAGTGATATCGGCAGGACCAAAAATGCAGGAGGCTTTTCAGTCTGGTGCTACCCCCATTCAGCCTGGAAAAAGGCACTTTCTGTGCTACAATATGCTTGGAAGTATAACCACAATGGAGCATGATGGATACTCCCATATAGAGATAGATTTTCACGACACTGGAAGAGGGCCACGAGTACCAGCAATGACCGATTACTTTGGTTTCACAATGGCTTCATTAAATGAGAATGGAAGCGTCTTTGCAAATCCGTGCAAGGGTGAGAATAACATGAGTACCCTCATGTACCGTCCATTCAGTAGCTGGGCAAATAACAGCGAGTGGTCAATGAGACTCGAAGGGGAAGAAGTGAAGGCTGTTGCACTTGGTACTTCTTGGGTTGCTGCTGTTACAAGTCTTAATTTTCTTCGAATCTTCACTCTGGGTGGCTTGCAGAGATTTGTTCTTTCTCTTGATGGGCCAGTGGTGAATGCATCAGGTTTCAGAGAAGAACTTGCGGTTGTTACACATGCTTCTCCTTCTCTTCCCTCAAATGAGCAGGTGCTAGAGTATAGAGTGTTCAATATTTGTAACGGTAGCCAGCCCATCCGAGGACGACTTCCGTTGACTCCTGGTTCATGTTTAACATGGTTTGGTTTCAGTGAAGGAGGCCAACTAAGTTCTTTTGATTCTTATGGTGTTCTAAGAGTGTTTACAAATCAATATGGAGGTAGTTGGCTCCCACTATTTAGTACTAGTAAATTAAAGAAGAAAGAGGAAAACTACTGGGTGGTTGGATTGAATGCAAGCAAATTGTTCTGCATTGTTTGCAAATCTCCTGATTTATTCCCGCAGGCTGTTCCTAAACCAGTTCTCACTCTTTTGGATCTTTCATTTCCTCTTGTATCCTCTGATCTGGGAGCAGAGAACCTCGAGAACGAGTTTATCTTTAGCAATATGCATCTCTGCCAGATTCAGAGAAGAATTGAAGAAATGGCAGCTGCTGGTGAGGACACCACTTCACTTGATGACGAGGCTTTCAATATGGAAGCAGCTCTCGATAGATGCATCTTGAGGCTCATTGCTTCATGCTGCAACGGTGATAAGCTTGTGAGAGCTACCGAACTCGTCAAACTTCTATCACTGGAAAAATCAGTGAGAGGTGCAATAAAGCTTGTTACTGCCCTCAAGCTACCGAATCTGGCAGAGCGGTTCAATACGATATTGGAGGAGAGGTTACTCAAAGAAACCACAGAGACTAAAGTCATTGCCAACACAAACTCGGATGCTTCAATGGAAGCTGCTGATGTTGTGGACGCCAAGACACTAACTTCACCCGAAATCTTCAAAAAATTCGAAAATATTATTAATCCATTATCCTCAGAGAAGTTGTCTTTCCCTTTGTTTAAGTCAGCTGCCAAAGCTGGAAAAGAGAAGAGTGAACAAAAGCAACCAGCAAATTTGGAAGATACTACAGGGGTAGTAAAGAATTTAGGGGGGGACTCGAAGAGTGTAGGAGGAGAGTTAAGGAAGGGTGGCGAGGTGAATCAGATACAGCAAACTCATCGCCCTTCTAATCCATTTGCAAAGACTACAAACAACCAAGAAAGATCTTCTTTGTTGGATTCGCTCAAGAAGATGAAGAAAACAGATGGCACAGGTAAAAGATAA

Network for GWHGAAZE018023

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	57	88	3.30E-05
PF00400.33	WD40	139	163	0.043
PF12894.8	ANAPC4_WD40	201	287	2.50E-08
PF12341.9	Mcl1_mid	426	708	1.20E-89

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.075
	SRR3591706	second leaf	1.642
	SRR3591707	mature leaf	0.372
	SRR3591708	Shoot apex	13.981
	SRR3591709	Stem	1.360
	SRR3591710	White floral bud	0.540
	SRR3591711	White flower	0.523
	SRR3591712	Green floral bud	0.672
	SRR3591713	Yellow flower	0.201
SRP173429	SRR8316895	Juvenile bud stage	2.295
	SRR8316896	Juvenile bud stage	2.322
	SRR8316897	Juvenile bud stage	1.219
	SRR8316894	Third green stage	0.876
	SRR8316900	Third green stage	1.443
	SRR8316901	Third green stage	0.566
	SRR8316898	Complete white stage	0.282
	SRR8316899	Complete white stage	0.679
	SRR8316903	Complete white stage	0.112
	SRR8316902	Silver flowering stage	0.416
	SRR8316904	Silver flowering stage	0.510
	SRR8316905	Silver flowering stage	0.047
	SRR8316906	Gold flowering stage	0.264
	SRR8316907	Gold flowering stage	0.404
	SRR8316908	Gold flowering stage	0.648
SRP132670	SRR6706286	Control	1.148
	SRR6706287	Light intensity 50%	1.501
	SRR6706288	Light intensity 20%	1.971
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.615
	CNS0095593	Slightly white alabastrum(diploid) 2	2.275
	CNS0095594	Slightly white alabastrum(diploid) 3	1.148
	CNS0095595	Whole white alabastrum(diploid) 2	0.886
	CNS0095596	Whole white alabastrum(diploid) 3	0.851
	CNS0095597	Whole white alabastrum(diploid) 4	0.499
	CNS0095598	Silvery flower (diploied) 1	1.224
	CNS0095599	Silvery flower (diploied) 2	1.294
	CNS0095600	Silvery flower (diploied) 3	0.426
	CNS0095601	Golden flower (diploid) 1	0.556
	CNS0095602	Golden flower (diploid) 2	0.334
	CNS0095603	Golden flower (diploid) 3	0.394
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.804
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.719
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.924
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.367
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.258
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.715
	CNS0095610	Silvery flower (tetraploid) 1	0.341
	CNS0095611	Silvery flower (tetraploid) 2	0.232
	CNS0095612	Silvery flower (tetraploid) 3	0.172
	CNS0095613	Golden flower (tetraploid) 1	0.213
	CNS0095614	Golden flower (tetraploid) 2	0.258
	CNS0095615	Golden flower (tetraploid) 3	0.068
CRA001975	CRR073297	Stem 1	5.194
	CRR073298	Stem 2	3.057
	CRR073299	Stem 3	4.771
	CRR073300	Leaf 1	1.437
	CRR073301	Leaf 2	1.172
	CRR073302	Leaf 3	0.482
	CRR073303	Juvenile bud 1	2.535
	CRR073304	Juvenile bud 2	0.648
	CRR073305	Juvenile bud 3	1.021
	CRR073306	Third green 1	0.054
	CRR073307	Third green 2	0.110
	CRR073308	Third green 3	0.229
	CRR073309	Second white 1	0.056
	CRR073310	Second white 2	0.106
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.107
	CRR073314	Silver flowering 3	0.016
	CRR073315	Gold flowering 1	0.048
	CRR073316	Gold flowering 2	0.242
	CRR073317	Gold flowering 3	0.229
	CRR073318	Tawny withering 1	3.519
	CRR073319	Tawny withering 2	2.177
	CRR073320	Tawny withering 3	2.793