Detail information of GWHGAAZE018024


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009787392.18.04064E-63PREDICTED: uncharacterized protein LOC104235354 [Nicotiana sylvestris]
Swissprottr|P0CH30|RING1_GOSHI2E-29E3 ubiquitin-protein ligase RING1
trEMBLtr|F6GTF6|F6GTF6_VITVI1E-62Putative uncharacterized protein {ECO:0000313|EMBL:CCB43165.1}
TAIR10AT5G08139.15E-33RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1380660013807319+
GWHAAZE00000005mRNA1380660013807319+
GWHAAZE00000005exon1380660013806807+
GWHAAZE00000005exon1380695213807319+
GWHAAZE00000005CDS1380660013806807+
GWHAAZE00000005CDS1380695213807319+
Transcript Sequence

Network for GWHGAAZE018024

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21281692.20E-11
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.317
SRR3591706second leaf4.619
SRR3591707mature leaf11.343
SRR3591708Shoot apex6.450
SRR3591709Stem12.892
SRR3591710White floral bud17.391
SRR3591711White flower8.667
SRR3591712Green floral bud20.450
SRR3591713Yellow flower7.421
SRP173429 SRR8316895Juvenile bud stage 1.621
SRR8316896Juvenile bud stage 2.785
SRR8316897Juvenile bud stage 1.433
SRR8316894Third green stage 1.594
SRR8316900Third green stage 3.579
SRR8316901Third green stage 2.606
SRR8316898Complete white stage 2.107
SRR8316899Complete white stage 2.938
SRR8316903Complete white stage 1.457
SRR8316902Silver flowering stage1.870
SRR8316904Silver flowering stage0.932
SRR8316905Silver flowering stage0.400
SRR8316906Gold flowering stage 2.207
SRR8316907Gold flowering stage 1.527
SRR8316908Gold flowering stage 3.077
SRP132670SRR6706286Control1.993
SRR6706287Light intensity 50%2.443
SRR6706288Light intensity 20%2.522
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.728
CNS0095593Slightly white alabastrum(diploid) 24.053
CNS0095594Slightly white alabastrum(diploid) 35.707
CNS0095595Whole white alabastrum(diploid) 26.675
CNS0095596Whole white alabastrum(diploid) 31.668
CNS0095597Whole white alabastrum(diploid) 44.869
CNS0095598Silvery flower (diploied) 10.863
CNS0095599Silvery flower (diploied) 22.582
CNS0095600Silvery flower (diploied) 33.809
CNS0095601Golden flower (diploid) 13.283
CNS0095602Golden flower (diploid) 24.733
CNS0095603Golden flower (diploid) 34.678
CNS0095604Slightly white alabastrum(tetraploid) 12.332
CNS0095605Slightly white alabastrum(tetraploid) 25.642
CNS0095606Slightly white alabastrum(tetraploid) 33.976
CNS0095607Whole white alabastrum(tetraploid) 14.049
CNS0095608Whole white alabastrum(tetraploid) 25.496
CNS0095609Whole white alabastrum(tetraploid) 32.890
CNS0095610Silvery flower (tetraploid) 12.329
CNS0095611Silvery flower (tetraploid) 23.589
CNS0095612Silvery flower (tetraploid) 32.772
CNS0095613Golden flower (tetraploid) 12.801
CNS0095614Golden flower (tetraploid) 23.672
CNS0095615Golden flower (tetraploid) 33.784
CRA001975CRR073297Stem 12.435
CRR073298Stem 23.093
CRR073299Stem 33.057
CRR073300Leaf 13.486
CRR073301Leaf 24.185
CRR073302Leaf 32.415
CRR073303Juvenile bud 14.487
CRR073304Juvenile bud 23.027
CRR073305Juvenile bud 34.291
CRR073306Third green 10.591
CRR073307Third green 20.912
CRR073308Third green 31.886
CRR073309Second white 12.429
CRR073310Second white 22.887
CRR073311Second white 32.247
CRR073312Silver flowering 13.805
CRR073313Silver flowering 21.719
CRR073314Silver flowering 32.462
CRR073315Gold flowering 12.203
CRR073316Gold flowering 22.923
CRR073317Gold flowering 32.262
CRR073318Tawny withering 13.177
CRR073319Tawny withering 23.636
CRR073320Tawny withering 35.797