Gene detail

Detail information of GWHGAAZE018034

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010099028.1	0	hypothetical protein L484_005320 [Morus notabilis]
Swissprot	tr\|Q8GWW7\|AGUA_ARATH	0	Agmatine deiminase
trEMBL	tr\|W9R8W8\|W9R8W8_9ROSA	0	Uncharacterized protein {ECO:0000313\|EMBL:EXB76386.1}
TAIR10	AT5G08170.1	2E-164	porphyromonas-type peptidyl-arginine deiminase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	13896474	13901333	-
GWHAAZE00000005	mRNA	13896474	13901333	-
GWHAAZE00000005	exon	13896474	13896560	-
GWHAAZE00000005	exon	13896898	13897056	-
GWHAAZE00000005	exon	13897433	13897665	-
GWHAAZE00000005	exon	13898712	13898846	-
GWHAAZE00000005	exon	13899113	13899191	-
GWHAAZE00000005	exon	13899313	13899368	-
GWHAAZE00000005	exon	13900093	13900177	-
GWHAAZE00000005	exon	13900282	13900371	-
GWHAAZE00000005	exon	13900459	13900572	-
GWHAAZE00000005	exon	13901247	13901333	-
GWHAAZE00000005	CDS	13901247	13901333	-
GWHAAZE00000005	CDS	13900459	13900572	-
GWHAAZE00000005	CDS	13900282	13900371	-
GWHAAZE00000005	CDS	13900093	13900177	-
GWHAAZE00000005	CDS	13899313	13899368	-
GWHAAZE00000005	CDS	13899113	13899191	-
GWHAAZE00000005	CDS	13898712	13898846	-
GWHAAZE00000005	CDS	13897433	13897665	-
GWHAAZE00000005	CDS	13896898	13897056	-
GWHAAZE00000005	CDS	13896474	13896560	-

Transcript Sequence
>GWHTAAZE018056 ATGGATTTAGAAGGGACGCCAGCTTCCCATGGATACCACATGCCTGCTGAATGGGAATCCCACTCCCAATGTTGGATGGGTTGGCCTGAGCGTCCTGATAACTGGCGAAACAATGCAGTGCCTGCTCAAAGTGTATTTACGAGGGTGGCATCTGCAATCTCAAAATTTGAGCCTGTCACCGTATGCGCTAGTGCTGCTCAGTGGGCTAATGCACGCAGCCAGTTGCCACAACATATCAGGGTTATTGAGATGAGCATGAACGATTCTTGGTTCCGCGACACTGGGCCAACCATTGTTGTGAGCAGGAGCAAATCGACTTCAGGGAACCTAGAACAGAAGGTTGCTGGAATTGATTGGAACTTCAATAGTTGGGGTGGTTGTGATGACGGTTGTTACACAGATTGGAGTCTTGATCTTCTTGTCGCCCGAAAGATTCTGGTCATCGAAAGGATTAATAGATTTCCTCAATCTATAATTCTGGAGGGTGGAAGCATTCATGTAGATGGAGAAGGAACTTGTCTGACTACCGAAGAGTGCCTCTTGAACAAAAACAGGAACCCTCATTTGACTAAAGAACAAATAGAGGACGAACTTAAAGCATATCTGGGAGTTAAAAAGATTATTTGGTTGCCTCATGGACTATACGGTGACGATGACACTAATGGTCATGTTGACAACATGTGTTGTTTTGTCAAGCCTGGTGTGGTTTTGTTGTCGTGGACTGATGATGAATCAGATCCTCAGTATGAACGTTCTATGGAAGCCTTCTCTGTACTTTCCAATTCTACGGATGCTAACGGTAGAAAATTCCAAATAATTAAACTCCACGTACCTGGACCATTATATATGACAGATGAAGAGGCTGCTGGAGTAGTTCAGGAAGGAGAAGGTAAAGCAAGACTTGCTGGTACAAGGCTGGCTGCTTCGTATGTGAACTTTTACATTGCCAATAGAGGAATCATCACACCGCAATTTGGTGACAAAAAGTGGGACGATGAAGCTGTTCGGGTCCTCTCTGTTGCCTTCCCAGATCATGAAGTGGTAAGAATTGATGATGCGAGGGAGATAGTTTTGGCCGGTGGAAATATACATTGTATCACACAACAGCAGCCTGGTTGTCCATGA

Network for GWHGAAZE018034

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04371.16	PAD_porph	13	371	1.50E-127

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10536	aguA	Metabolic pathways	map01100
K10536	aguA	Arginine and proline metabolism	map00330

Gene Ontology

GO term	Ontology	Name
GO:0009446	biological_process	putrescine biosynthetic process
GO:0047632	molecular_function	agmatine deiminase activity
GO:0004668	molecular_function	protein-arginine deiminase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	56.675
	SRR3591706	second leaf	35.821
	SRR3591707	mature leaf	44.575
	SRR3591708	Shoot apex	55.888
	SRR3591709	Stem	50.565
	SRR3591710	White floral bud	33.064
	SRR3591711	White flower	47.634
	SRR3591712	Green floral bud	35.775
	SRR3591713	Yellow flower	36.944
SRP173429	SRR8316895	Juvenile bud stage	55.052
	SRR8316896	Juvenile bud stage	79.217
	SRR8316897	Juvenile bud stage	43.349
	SRR8316894	Third green stage	17.649
	SRR8316900	Third green stage	51.021
	SRR8316901	Third green stage	56.855
	SRR8316898	Complete white stage	23.651
	SRR8316899	Complete white stage	97.869
	SRR8316903	Complete white stage	31.889
	SRR8316902	Silver flowering stage	29.880
	SRR8316904	Silver flowering stage	31.249
	SRR8316905	Silver flowering stage	16.376
	SRR8316906	Gold flowering stage	65.492
	SRR8316907	Gold flowering stage	51.480
	SRR8316908	Gold flowering stage	76.718
SRP132670	SRR6706286	Control	60.737
	SRR6706287	Light intensity 50%	57.960
	SRR6706288	Light intensity 20%	56.847
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	45.851
	CNS0095593	Slightly white alabastrum(diploid) 2	53.863
	CNS0095594	Slightly white alabastrum(diploid) 3	50.520
	CNS0095595	Whole white alabastrum(diploid) 2	50.750
	CNS0095596	Whole white alabastrum(diploid) 3	29.683
	CNS0095597	Whole white alabastrum(diploid) 4	31.862
	CNS0095598	Silvery flower (diploied) 1	54.246
	CNS0095599	Silvery flower (diploied) 2	72.996
	CNS0095600	Silvery flower (diploied) 3	52.366
	CNS0095601	Golden flower (diploid) 1	68.241
	CNS0095602	Golden flower (diploid) 2	70.094
	CNS0095603	Golden flower (diploid) 3	66.715
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.871
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.332
	CNS0095606	Slightly white alabastrum(tetraploid) 3	53.472
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.725
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.590
	CNS0095609	Whole white alabastrum(tetraploid) 3	37.928
	CNS0095610	Silvery flower (tetraploid) 1	60.681
	CNS0095611	Silvery flower (tetraploid) 2	55.202
	CNS0095612	Silvery flower (tetraploid) 3	37.699
	CNS0095613	Golden flower (tetraploid) 1	40.492
	CNS0095614	Golden flower (tetraploid) 2	55.263
	CNS0095615	Golden flower (tetraploid) 3	30.450
CRA001975	CRR073297	Stem 1	49.036
	CRR073298	Stem 2	47.594
	CRR073299	Stem 3	43.137
	CRR073300	Leaf 1	53.056
	CRR073301	Leaf 2	54.067
	CRR073302	Leaf 3	58.233
	CRR073303	Juvenile bud 1	47.826
	CRR073304	Juvenile bud 2	42.464
	CRR073305	Juvenile bud 3	53.228
	CRR073306	Third green 1	15.461
	CRR073307	Third green 2	15.583
	CRR073308	Third green 3	15.976
	CRR073309	Second white 1	26.011
	CRR073310	Second white 2	20.174
	CRR073311	Second white 3	18.006
	CRR073312	Silver flowering 1	21.799
	CRR073313	Silver flowering 2	25.112
	CRR073314	Silver flowering 3	16.687
	CRR073315	Gold flowering 1	49.302
	CRR073316	Gold flowering 2	81.254
	CRR073317	Gold flowering 3	50.781
	CRR073318	Tawny withering 1	50.069
	CRR073319	Tawny withering 2	61.830
	CRR073320	Tawny withering 3	42.955