Gene detail

Detail information of GWHGAAZE018043

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP21322.1	1.26487E-93	unnamed protein product [Coffea canephora]
Swissprot	tr\|P68175\|STSY_RAUSE	1E-80	Strictosidine synthase (Precursor)
trEMBL	tr\|A0A068VL45\|A0A068VL45_COFCA	5E-94	Coffea canephora DH200=94 genomic scaffold, scaffold_3399 {ECO:0000313\|EMBL:CDP21322.1}
TAIR10	AT1G74010.1	4E-56	Calcium-dependent phosphotriesterase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	13995477	13997297	+
GWHAAZE00000005	mRNA	13995477	13997297	+
GWHAAZE00000005	exon	13995477	13995691	+
GWHAAZE00000005	exon	13996147	13996416	+
GWHAAZE00000005	exon	13996823	13997297	+
GWHAAZE00000005	CDS	13995477	13995691	+
GWHAAZE00000005	CDS	13996147	13996416	+
GWHAAZE00000005	CDS	13996823	13997297	+

Transcript Sequence
>GWHTAAZE018065 ATGCCCATGCTCTCTATTTTTATCCTCTGCTTTTCTTTCCCTTTAACTATCCTTTCAGCTCCTACCTTGAAATCATTCCCCGTCCCCTCCGGTGGCCCTGAGTCACTCATCTTCAACCCCACGGGCGGATTCTTCACCGGAGTTAACGACGGTAGAATCGTCAAGTACTCCAAAGGCGCCGGATGGGTCGACTTCGCTTACGCCTCTCCAACTAGGACTGAGAAAAAGTGTGGAGGTACTACTGACTCGGCACTGGGGAATATATGCGGAAGAACACTGGGTTTGGGGATGAACTATAAGACAAGGGAGCTTTATTTGGCAGATGCTTACCATGGACTCTGTGTGGTTGGACCTAAGGGAGGTCAAGCTAAGCAACTCCTGTCAAGTGCAGCTGGACAGCCTTTAAAGTGGCTCGATGGTATAGATGTGGATCAAACCACTGGAAATGTTTATTTCACTGATGTTAGCACAGCTTACAACCTCAGTCAAGTACAGCAACATCTTGCCACGGGAGACTCAACCGGCCGATTGATAGAATATAACGTAAAGACCAAAAAGGAGAGAGTGTTGCTAACCGGACTCAAAGGAGCTGGTGGAGCCGGAGTAGCAAAAGATGGTTCATTTGTCTTACTCACAGAATTCACGGGCAATAGAATCACCAAATACTGGTTAAAAGGACCAAAGGCAAATACTGCAGAGCTTTTGATGAATATCTCAGGTCCAGCCAACGTGAAAAGGACTCAGAATGGAGAATTTTGGATTGCGTTAAATGTACCCGGAAAAATCAACATACCCACTGGAATGAGAATGGATGGAAATGGGAAAATCTTGGAGAAGGTTAGCTTTGGGGCGCCTTATAATAACACCTTCATTACTGAAGTTCAAGAGCACCACCGTAAATTGTACATTTCTACTCTTTATGTAGATTTTTATGCTGTGTACAGATATTCGCGCCCTTAG

Network for GWHGAAZE018043

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0075

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03088.17	Str_synth	139	227	2.30E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0016844	molecular_function	strictosidine synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	431.155
	SRR3591706	second leaf	148.475
	SRR3591707	mature leaf	52.821
	SRR3591708	Shoot apex	388.022
	SRR3591709	Stem	95.691
	SRR3591710	White floral bud	51.028
	SRR3591711	White flower	60.500
	SRR3591712	Green floral bud	8.679
	SRR3591713	Yellow flower	0.991
SRP173429	SRR8316895	Juvenile bud stage	197.651
	SRR8316896	Juvenile bud stage	84.912
	SRR8316897	Juvenile bud stage	105.029
	SRR8316894	Third green stage	17.825
	SRR8316900	Third green stage	7.125
	SRR8316901	Third green stage	14.895
	SRR8316898	Complete white stage	6.527
	SRR8316899	Complete white stage	52.466
	SRR8316903	Complete white stage	22.311
	SRR8316902	Silver flowering stage	1.944
	SRR8316904	Silver flowering stage	2.765
	SRR8316905	Silver flowering stage	2.890
	SRR8316906	Gold flowering stage	1.433
	SRR8316907	Gold flowering stage	5.421
	SRR8316908	Gold flowering stage	1.544
SRP132670	SRR6706286	Control	22.619
	SRR6706287	Light intensity 50%	25.889
	SRR6706288	Light intensity 20%	13.328
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	132.419
	CNS0095593	Slightly white alabastrum(diploid) 2	96.609
	CNS0095594	Slightly white alabastrum(diploid) 3	118.276
	CNS0095595	Whole white alabastrum(diploid) 2	76.507
	CNS0095596	Whole white alabastrum(diploid) 3	11.487
	CNS0095597	Whole white alabastrum(diploid) 4	57.498
	CNS0095598	Silvery flower (diploied) 1	627.115
	CNS0095599	Silvery flower (diploied) 2	826.638
	CNS0095600	Silvery flower (diploied) 3	125.949
	CNS0095601	Golden flower (diploid) 1	759.441
	CNS0095602	Golden flower (diploid) 2	324.027
	CNS0095603	Golden flower (diploid) 3	319.091
	CNS0095604	Slightly white alabastrum(tetraploid) 1	49.178
	CNS0095605	Slightly white alabastrum(tetraploid) 2	60.641
	CNS0095606	Slightly white alabastrum(tetraploid) 3	83.546
	CNS0095607	Whole white alabastrum(tetraploid) 1	38.687
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.956
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.718
	CNS0095610	Silvery flower (tetraploid) 1	4.739
	CNS0095611	Silvery flower (tetraploid) 2	73.423
	CNS0095612	Silvery flower (tetraploid) 3	26.441
	CNS0095613	Golden flower (tetraploid) 1	1.102
	CNS0095614	Golden flower (tetraploid) 2	1.603
	CNS0095615	Golden flower (tetraploid) 3	0.631
CRA001975	CRR073297	Stem 1	214.539
	CRR073298	Stem 2	147.404
	CRR073299	Stem 3	313.006
	CRR073300	Leaf 1	8.940
	CRR073301	Leaf 2	11.048
	CRR073302	Leaf 3	11.950
	CRR073303	Juvenile bud 1	8.499
	CRR073304	Juvenile bud 2	15.613
	CRR073305	Juvenile bud 3	4.941
	CRR073306	Third green 1	9.025
	CRR073307	Third green 2	16.943
	CRR073308	Third green 3	9.617
	CRR073309	Second white 1	4.466
	CRR073310	Second white 2	0.996
	CRR073311	Second white 3	0.427
	CRR073312	Silver flowering 1	0.197
	CRR073313	Silver flowering 2	0.313
	CRR073314	Silver flowering 3	0.304
	CRR073315	Gold flowering 1	2.604
	CRR073316	Gold flowering 2	14.751
	CRR073317	Gold flowering 3	9.185
	CRR073318	Tawny withering 1	81.721
	CRR073319	Tawny withering 2	249.023
	CRR073320	Tawny withering 3	49.017