Gene detail

Detail information of GWHGAAZE018045

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AES93117.1	1.51449E-95	strictosidine synthase [Camptotheca acuminata]
Swissprot	tr\|P18417\|STSY_CATRO	3E-79	Strictosidine synthase (Precursor)
trEMBL	tr\|G8E0P6\|G8E0P6_CAMAC	6E-96	Strictosidine synthase {ECO:0000313\|EMBL:AES93117.1}
TAIR10	AT1G74020.1	9E-59	strictosidine synthase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	14070660	14072166	-
GWHAAZE00000005	mRNA	14070660	14072166	-
GWHAAZE00000005	exon	14070660	14071182	-
GWHAAZE00000005	exon	14071333	14071602	-
GWHAAZE00000005	exon	14071806	14072073	-
GWHAAZE00000005	exon	14072160	14072166	-
GWHAAZE00000005	CDS	14072160	14072166	-
GWHAAZE00000005	CDS	14071806	14072073	-
GWHAAZE00000005	CDS	14071333	14071602	-
GWHAAZE00000005	CDS	14070660	14071182	-

Transcript Sequence
>GWHTAAZE018067 ATGCTCGTTGAAAGCATGGCAATAATTCTCACTTGCAGAAACACTGTAGCCATGCTCCACATAATCATCATTTTATTTTCCTTTTCCTTTCCCTCCCCCTCCATGAGCATTTCTTCTTTATCGTTCGAAACTTTTCCAGTGCCATCCGGAGGCCCTGAGGCCTTCATCTTTGACTCAACTGGCGCACTCTACACCGGTGTTAACGACGGTAGAATTCTCAAATACAATACATCCTCAAAGGCTTCCATCGACTTTGCCCATGCTTCTCCAAAGAGGAATAAGACATTGTGCGATGGCAAGGCAGACCCAAAATTAGGGTATATTTGTGGAAGGACTCTGGGCTTGGGGTTTCACTATAAGACCAATCAGCTCTACATGGCCGACGCATATCATGGCCTCTGCGTGGTGGGGCCTAAAGGCGGTCTCGCAACTCAACTCCTCAATAGCGTAGGGGGACAGCCCCTAAAATGGCTGGACGGGATAGACGTGGACCAGCGCACGGGAAATGTTTACTTCACAGACGTAAGCTCTGTATACAATTTGAGTCAAGTTCAAGAGAGTATTAACGCAGGGGACTCAACAGGAAAATTCATGGTGTACAATCCAAATACCAAAAAGGCTAGGGTTTTGTTAACTGGGCTTAAAGCACCTGGTGGAGTAGGAGTGGCTAATGACAGCTCATTTGTCCTTGTTTCTGAATTCACAGGCAACAGAATCTGGAAGTATTGGTTGACAGGTGTCAAGGCAAATACAGCACAACTATTAATGAACACATCGACACCGGCCAACATTAAGAAGACGAGATCGGGTGATTTTTGGGTGGCGTCGAATATACAGAAACCCAATTATATACCAGGAGGAATAAGGATAAATGGAGATGGCAAAATTCTGGAAACTCTGACATTTGGGGCGCCGTATAACAACACGCCTATCACTGAAGTTCATAGGCACCGCGATCAATTATATGTGGCTGATTATTATGTGAACTTTGGTTGTGCTTACAAGATTTCTCGTCATCCTCGGAAAACTTTGGGGGGTGGTGTGGGCAAAATAGAGAAGTCTCCGTAG

Network for GWHGAAZE018045

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0229

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03088.17	Str_synth	159	246	8.90E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0016844	molecular_function	strictosidine synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	427.943
	SRR3591706	second leaf	360.267
	SRR3591707	mature leaf	134.607
	SRR3591708	Shoot apex	454.201
	SRR3591709	Stem	208.400
	SRR3591710	White floral bud	417.668
	SRR3591711	White flower	491.286
	SRR3591712	Green floral bud	195.687
	SRR3591713	Yellow flower	43.827
SRP173429	SRR8316895	Juvenile bud stage	265.536
	SRR8316896	Juvenile bud stage	147.486
	SRR8316897	Juvenile bud stage	96.540
	SRR8316894	Third green stage	51.553
	SRR8316900	Third green stage	59.121
	SRR8316901	Third green stage	56.745
	SRR8316898	Complete white stage	32.338
	SRR8316899	Complete white stage	107.030
	SRR8316903	Complete white stage	117.800
	SRR8316902	Silver flowering stage	89.849
	SRR8316904	Silver flowering stage	103.739
	SRR8316905	Silver flowering stage	55.601
	SRR8316906	Gold flowering stage	180.321
	SRR8316907	Gold flowering stage	205.586
	SRR8316908	Gold flowering stage	186.125
SRP132670	SRR6706286	Control	121.202
	SRR6706287	Light intensity 50%	149.095
	SRR6706288	Light intensity 20%	129.618
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	289.774
	CNS0095593	Slightly white alabastrum(diploid) 2	188.770
	CNS0095594	Slightly white alabastrum(diploid) 3	262.678
	CNS0095595	Whole white alabastrum(diploid) 2	139.742
	CNS0095596	Whole white alabastrum(diploid) 3	59.619
	CNS0095597	Whole white alabastrum(diploid) 4	97.187
	CNS0095598	Silvery flower (diploied) 1	2440.714
	CNS0095599	Silvery flower (diploied) 2	2056.245
	CNS0095600	Silvery flower (diploied) 3	418.374
	CNS0095601	Golden flower (diploid) 1	843.933
	CNS0095602	Golden flower (diploid) 2	467.558
	CNS0095603	Golden flower (diploid) 3	468.490
	CNS0095604	Slightly white alabastrum(tetraploid) 1	149.357
	CNS0095605	Slightly white alabastrum(tetraploid) 2	135.167
	CNS0095606	Slightly white alabastrum(tetraploid) 3	293.565
	CNS0095607	Whole white alabastrum(tetraploid) 1	187.178
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.393
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.379
	CNS0095610	Silvery flower (tetraploid) 1	139.194
	CNS0095611	Silvery flower (tetraploid) 2	272.745
	CNS0095612	Silvery flower (tetraploid) 3	115.630
	CNS0095613	Golden flower (tetraploid) 1	58.176
	CNS0095614	Golden flower (tetraploid) 2	125.284
	CNS0095615	Golden flower (tetraploid) 3	21.849
CRA001975	CRR073297	Stem 1	125.964
	CRR073298	Stem 2	112.085
	CRR073299	Stem 3	286.930
	CRR073300	Leaf 1	12.849
	CRR073301	Leaf 2	21.048
	CRR073302	Leaf 3	36.094
	CRR073303	Juvenile bud 1	3.040
	CRR073304	Juvenile bud 2	11.626
	CRR073305	Juvenile bud 3	6.207
	CRR073306	Third green 1	54.463
	CRR073307	Third green 2	39.090
	CRR073308	Third green 3	56.505
	CRR073309	Second white 1	99.687
	CRR073310	Second white 2	54.125
	CRR073311	Second white 3	31.677
	CRR073312	Silver flowering 1	34.848
	CRR073313	Silver flowering 2	27.128
	CRR073314	Silver flowering 3	34.292
	CRR073315	Gold flowering 1	15.054
	CRR073316	Gold flowering 2	11.713
	CRR073317	Gold flowering 3	11.332
	CRR073318	Tawny withering 1	20.055
	CRR073319	Tawny withering 2	19.007
	CRR073320	Tawny withering 3	27.515