Detail information of GWHGAAZE018052


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002272187.16.6776E-98PREDICTED: protein Dr1 homolog [Vitis vinifera]
Swissprottr|P49592|NC2B_ARATH2E-87Protein Dr1 homolog
trEMBLtr|D7SIT4|D7SIT4_VITVI2E-98Putative uncharacterized protein {ECO:0000313|EMBL:CBI15395.3}
TAIR10AT5G23090.43E-69nuclear factor Y, subunit B13

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1411245314115495+
GWHAAZE00000005mRNA1411245314115495+
GWHAAZE00000005exon1411245314112476+
GWHAAZE00000005exon1411263514112699+
GWHAAZE00000005exon1411350814113597+
GWHAAZE00000005exon1411462214114716+
GWHAAZE00000005exon1411505114115119+
GWHAAZE00000005exon1411529814115495+
GWHAAZE00000005five_prime_UTR1411245314112476+
GWHAAZE00000005five_prime_UTR1411263514112644+
GWHAAZE00000005CDS1411264514112699+
GWHAAZE00000005CDS1411350814113597+
GWHAAZE00000005CDS1411462214114716+
GWHAAZE00000005CDS1411505114115119+
GWHAAZE00000005CDS1411529814115459+
GWHAAZE00000005three_prime_UTR1411546014115495+
Transcript Sequence

Network for GWHGAAZE018052

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00808.24CBFD_NFYB_HMF14795.40E-22
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyNF-YB

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046982molecular_functionprotein heterodimerization activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf57.159
SRR3591706second leaf19.492
SRR3591707mature leaf26.211
SRR3591708Shoot apex35.720
SRR3591709Stem46.119
SRR3591710White floral bud32.540
SRR3591711White flower34.998
SRR3591712Green floral bud21.505
SRR3591713Yellow flower37.243
SRP173429 SRR8316895Juvenile bud stage 23.570
SRR8316896Juvenile bud stage 34.400
SRR8316897Juvenile bud stage 17.720
SRR8316894Third green stage 7.078
SRR8316900Third green stage 18.922
SRR8316901Third green stage 20.604
SRR8316898Complete white stage 9.548
SRR8316899Complete white stage 25.049
SRR8316903Complete white stage 13.458
SRR8316902Silver flowering stage13.204
SRR8316904Silver flowering stage11.170
SRR8316905Silver flowering stage5.414
SRR8316906Gold flowering stage 19.834
SRR8316907Gold flowering stage 24.670
SRR8316908Gold flowering stage 24.384
SRP132670SRR6706286Control10.175
SRR6706287Light intensity 50%10.614
SRR6706288Light intensity 20%9.473
CNP0000432CNS0095592Slightly white alabastrum(diploid) 130.128
CNS0095593Slightly white alabastrum(diploid) 234.941
CNS0095594Slightly white alabastrum(diploid) 345.908
CNS0095595Whole white alabastrum(diploid) 228.382
CNS0095596Whole white alabastrum(diploid) 319.418
CNS0095597Whole white alabastrum(diploid) 428.807
CNS0095598Silvery flower (diploied) 142.232
CNS0095599Silvery flower (diploied) 241.465
CNS0095600Silvery flower (diploied) 327.704
CNS0095601Golden flower (diploid) 145.399
CNS0095602Golden flower (diploid) 237.667
CNS0095603Golden flower (diploid) 334.147
CNS0095604Slightly white alabastrum(tetraploid) 122.576
CNS0095605Slightly white alabastrum(tetraploid) 224.480
CNS0095606Slightly white alabastrum(tetraploid) 328.366
CNS0095607Whole white alabastrum(tetraploid) 128.211
CNS0095608Whole white alabastrum(tetraploid) 220.831
CNS0095609Whole white alabastrum(tetraploid) 317.677
CNS0095610Silvery flower (tetraploid) 132.350
CNS0095611Silvery flower (tetraploid) 224.629
CNS0095612Silvery flower (tetraploid) 328.106
CNS0095613Golden flower (tetraploid) 148.709
CNS0095614Golden flower (tetraploid) 235.238
CNS0095615Golden flower (tetraploid) 328.022
CRA001975CRR073297Stem 120.834
CRR073298Stem 220.658
CRR073299Stem 320.193
CRR073300Leaf 117.759
CRR073301Leaf 217.693
CRR073302Leaf 313.902
CRR073303Juvenile bud 112.374
CRR073304Juvenile bud 215.080
CRR073305Juvenile bud 313.030
CRR073306Third green 110.491
CRR073307Third green 210.110
CRR073308Third green 312.544
CRR073309Second white 113.742
CRR073310Second white 213.418
CRR073311Second white 36.407
CRR073312Silver flowering 117.807
CRR073313Silver flowering 220.925
CRR073314Silver flowering 314.326
CRR073315Gold flowering 115.738
CRR073316Gold flowering 219.524
CRR073317Gold flowering 315.313
CRR073318Tawny withering 121.211
CRR073319Tawny withering 223.724
CRR073320Tawny withering 327.311