Detail information of GWHGAAZE018057


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010110786.10Translation initiation factor eIF-2B subunit delta [Morus notabilis]
trEMBLtr|W9S6A9|W9S6A9_9ROSA0Translation initiation factor eIF-2B subunit delta {ECO:0000313|EMBL:EXC28051.1}
TAIR10AT5G38640.10NagB/RpiA/CoA transferase-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1417324614176644-
GWHAAZE00000005mRNA1417324614176644-
GWHAAZE00000005exon1417324614173308-
GWHAAZE00000005exon1417342314173477-
GWHAAZE00000005exon1417356714173672-
GWHAAZE00000005exon1417379414174538-
GWHAAZE00000005exon1417498614175350-
GWHAAZE00000005exon1417558914175726-
GWHAAZE00000005exon1417619414176644-
GWHAAZE00000005CDS1417619414176644-
GWHAAZE00000005CDS1417558914175726-
GWHAAZE00000005CDS1417498614175350-
GWHAAZE00000005CDS1417379414174538-
GWHAAZE00000005CDS1417356714173672-
GWHAAZE00000005CDS1417342314173477-
GWHAAZE00000005CDS1417324614173308-
Transcript Sequence

Network for GWHGAAZE018057

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01008.18IF-2B3286237.30E-81
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03680EIF2B4 RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0044237biological_processcellular metabolic process

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.209
SRR3591706second leaf11.942
SRR3591707mature leaf20.355
SRR3591708Shoot apex11.288
SRR3591709Stem11.678
SRR3591710White floral bud13.957
SRR3591711White flower10.948
SRR3591712Green floral bud14.747
SRR3591713Yellow flower6.156
SRP173429 SRR8316895Juvenile bud stage 6.604
SRR8316896Juvenile bud stage 9.729
SRR8316897Juvenile bud stage 4.497
SRR8316894Third green stage 7.510
SRR8316900Third green stage 17.025
SRR8316901Third green stage 17.362
SRR8316898Complete white stage 4.955
SRR8316899Complete white stage 26.953
SRR8316903Complete white stage 10.120
SRR8316902Silver flowering stage1.509
SRR8316904Silver flowering stage2.250
SRR8316905Silver flowering stage1.342
SRR8316906Gold flowering stage 3.178
SRR8316907Gold flowering stage 2.900
SRR8316908Gold flowering stage 3.938
SRP132670SRR6706286Control20.127
SRR6706287Light intensity 50%25.173
SRR6706288Light intensity 20%26.196
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.191
CNS0095593Slightly white alabastrum(diploid) 211.605
CNS0095594Slightly white alabastrum(diploid) 37.686
CNS0095595Whole white alabastrum(diploid) 29.652
CNS0095596Whole white alabastrum(diploid) 37.357
CNS0095597Whole white alabastrum(diploid) 48.329
CNS0095598Silvery flower (diploied) 18.937
CNS0095599Silvery flower (diploied) 24.773
CNS0095600Silvery flower (diploied) 36.768
CNS0095601Golden flower (diploid) 17.410
CNS0095602Golden flower (diploid) 26.525
CNS0095603Golden flower (diploid) 36.437
CNS0095604Slightly white alabastrum(tetraploid) 117.803
CNS0095605Slightly white alabastrum(tetraploid) 211.429
CNS0095606Slightly white alabastrum(tetraploid) 329.928
CNS0095607Whole white alabastrum(tetraploid) 110.910
CNS0095608Whole white alabastrum(tetraploid) 28.401
CNS0095609Whole white alabastrum(tetraploid) 319.990
CNS0095610Silvery flower (tetraploid) 17.857
CNS0095611Silvery flower (tetraploid) 28.210
CNS0095612Silvery flower (tetraploid) 34.199
CNS0095613Golden flower (tetraploid) 12.975
CNS0095614Golden flower (tetraploid) 25.639
CNS0095615Golden flower (tetraploid) 32.305
CRA001975CRR073297Stem 111.778
CRR073298Stem 213.773
CRR073299Stem 310.077
CRR073300Leaf 119.763
CRR073301Leaf 221.018
CRR073302Leaf 315.774
CRR073303Juvenile bud 113.158
CRR073304Juvenile bud 27.919
CRR073305Juvenile bud 320.060
CRR073306Third green 10.776
CRR073307Third green 20.774
CRR073308Third green 30.928
CRR073309Second white 10.356
CRR073310Second white 20.180
CRR073311Second white 30.220
CRR073312Silver flowering 10.451
CRR073313Silver flowering 20.866
CRR073314Silver flowering 30.432
CRR073315Gold flowering 17.926
CRR073316Gold flowering 27.491
CRR073317Gold flowering 35.951
CRR073318Tawny withering 16.157
CRR073319Tawny withering 24.905
CRR073320Tawny withering 36.710