Detail information of GWHGAAZE018062


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011100319.10PREDICTED: general transcription factor IIE subunit 1-like [Sesamum indicum]
trEMBLtr|D7SQ27|D7SQ27_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI17757.3}
TAIR10AT1G03280.13E-120Transcription factor TFIIE, alpha subunit

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1446928214476320-
GWHAAZE00000005mRNA1446928214476320-
GWHAAZE00000005exon1446928214469367-
GWHAAZE00000005exon1447040414470614-
GWHAAZE00000005exon1447071814470924-
GWHAAZE00000005exon1447139814471601-
GWHAAZE00000005exon1447238414472567-
GWHAAZE00000005exon1447266414472773-
GWHAAZE00000005exon1447339514473523-
GWHAAZE00000005exon1447418914474302-
GWHAAZE00000005exon1447478014474900-
GWHAAZE00000005exon1447520014475275-
GWHAAZE00000005exon1447575614475784-
GWHAAZE00000005exon1447599514476117-
GWHAAZE00000005exon1447629814476320-
GWHAAZE00000005CDS1447629814476320-
GWHAAZE00000005CDS1447599514476117-
GWHAAZE00000005CDS1447575614475784-
GWHAAZE00000005CDS1447520014475275-
GWHAAZE00000005CDS1447478014474900-
GWHAAZE00000005CDS1447418914474302-
GWHAAZE00000005CDS1447339514473523-
GWHAAZE00000005CDS1447266414472773-
GWHAAZE00000005CDS1447238414472567-
GWHAAZE00000005CDS1447139814471601-
GWHAAZE00000005CDS1447071814470924-
GWHAAZE00000005CDS1447040414470614-
GWHAAZE00000005CDS1446928214469367-
Transcript Sequence

Network for GWHGAAZE018062

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03136TFIIE1, GTF2E1, TFA1, tfe Basal transcription factors map03022

Gene Ontology

GO term OntologyName
GO:0006367biological_processtranscription initiation from RNA polymerase II promoter

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.453
SRR3591706second leaf3.933
SRR3591707mature leaf5.872
SRR3591708Shoot apex9.151
SRR3591709Stem4.796
SRR3591710White floral bud4.895
SRR3591711White flower4.691
SRR3591712Green floral bud3.893
SRR3591713Yellow flower3.032
SRP173429 SRR8316895Juvenile bud stage 6.537
SRR8316896Juvenile bud stage 7.268
SRR8316897Juvenile bud stage 3.465
SRR8316894Third green stage 3.934
SRR8316900Third green stage 5.927
SRR8316901Third green stage 5.769
SRR8316898Complete white stage 0.836
SRR8316899Complete white stage 8.611
SRR8316903Complete white stage 3.218
SRR8316902Silver flowering stage1.492
SRR8316904Silver flowering stage3.097
SRR8316905Silver flowering stage1.386
SRR8316906Gold flowering stage 4.135
SRR8316907Gold flowering stage 2.757
SRR8316908Gold flowering stage 2.266
SRP132670SRR6706286Control11.097
SRR6706287Light intensity 50%10.493
SRR6706288Light intensity 20%10.116
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.913
CNS0095593Slightly white alabastrum(diploid) 23.647
CNS0095594Slightly white alabastrum(diploid) 35.042
CNS0095595Whole white alabastrum(diploid) 23.577
CNS0095596Whole white alabastrum(diploid) 32.425
CNS0095597Whole white alabastrum(diploid) 43.862
CNS0095598Silvery flower (diploied) 111.738
CNS0095599Silvery flower (diploied) 26.905
CNS0095600Silvery flower (diploied) 35.523
CNS0095601Golden flower (diploid) 18.066
CNS0095602Golden flower (diploid) 26.610
CNS0095603Golden flower (diploid) 37.173
CNS0095604Slightly white alabastrum(tetraploid) 16.582
CNS0095605Slightly white alabastrum(tetraploid) 23.380
CNS0095606Slightly white alabastrum(tetraploid) 312.493
CNS0095607Whole white alabastrum(tetraploid) 13.826
CNS0095608Whole white alabastrum(tetraploid) 21.487
CNS0095609Whole white alabastrum(tetraploid) 35.727
CNS0095610Silvery flower (tetraploid) 17.546
CNS0095611Silvery flower (tetraploid) 27.897
CNS0095612Silvery flower (tetraploid) 35.373
CNS0095613Golden flower (tetraploid) 14.187
CNS0095614Golden flower (tetraploid) 25.421
CNS0095615Golden flower (tetraploid) 34.705
CRA001975CRR073297Stem 19.355
CRR073298Stem 29.383
CRR073299Stem 36.052
CRR073300Leaf 19.040
CRR073301Leaf 25.994
CRR073302Leaf 33.722
CRR073303Juvenile bud 13.477
CRR073304Juvenile bud 21.625
CRR073305Juvenile bud 33.221
CRR073306Third green 10.133
CRR073307Third green 20.174
CRR073308Third green 30.603
CRR073309Second white 10.276
CRR073310Second white 20.733
CRR073311Second white 30.635
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.114
CRR073314Silver flowering 30.519
CRR073315Gold flowering 13.601
CRR073316Gold flowering 26.343
CRR073317Gold flowering 32.857
CRR073318Tawny withering 13.021
CRR073319Tawny withering 23.408
CRR073320Tawny withering 35.230