Gene detail

Detail information of GWHGAAZE018064

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007036428.1	MUTS isoform 2 [Theobroma cacao]
Swissprot	tr\|O24617\|MSH2_ARATH	DNA mismatch repair protein MSH2
trEMBL	tr\|A0A061G1K8\|A0A061G1K8_THECC	MUTS isoform 2 {ECO:0000313\|EMBL:EOY20929.1}
TAIR10	AT3G18524.1	MUTS homolog 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	14534352	14540761	+
GWHAAZE00000005	mRNA	14534352	14540761	+
GWHAAZE00000005	exon	14534352	14534433	+
GWHAAZE00000005	exon	14534555	14534604	+
GWHAAZE00000005	exon	14534687	14534719	+
GWHAAZE00000005	exon	14535002	14536075	+
GWHAAZE00000005	exon	14536785	14537339	+
GWHAAZE00000005	exon	14537417	14537527	+
GWHAAZE00000005	exon	14537941	14538030	+
GWHAAZE00000005	exon	14538127	14538198	+
GWHAAZE00000005	exon	14538437	14538547	+
GWHAAZE00000005	exon	14539009	14539135	+
GWHAAZE00000005	exon	14539324	14539523	+
GWHAAZE00000005	exon	14539784	14539936	+
GWHAAZE00000005	exon	14540561	14540761	+
GWHAAZE00000005	five_prime_UTR	14534352	14534384	+
GWHAAZE00000005	CDS	14534385	14534433	+
GWHAAZE00000005	CDS	14534555	14534604	+
GWHAAZE00000005	CDS	14534687	14534719	+
GWHAAZE00000005	CDS	14535002	14536075	+
GWHAAZE00000005	CDS	14536785	14537339	+
GWHAAZE00000005	CDS	14537417	14537527	+
GWHAAZE00000005	CDS	14537941	14538030	+
GWHAAZE00000005	CDS	14538127	14538198	+
GWHAAZE00000005	CDS	14538437	14538547	+
GWHAAZE00000005	CDS	14539009	14539135	+
GWHAAZE00000005	CDS	14539324	14539523	+
GWHAAZE00000005	CDS	14539784	14539936	+
GWHAAZE00000005	CDS	14540561	14540761	+

Transcript Sequence
>GWHTAAZE018086 CCTTCAAAAATCCCTGTTAAGAATCGCCCCAAAATGGATCAAAATTTGCAGCAACATAACAAACTTCCCGAACTCAAACTCGATGCTAAACAGGCTCAAGGTTTTCTCACGTTCTTCAAAACCCTACCTAATGACTCGAGGGCTGTTCGATTCTTCGATCGCCGGGACTATTATACTGCCCATGGTGACAATGCGACCTTCATTGCAAAAACTTATCATCATACAACCACTGCTTTACGACAACTGGGTAGTGGCTCTGATGCTATTTCTAGTGTCAGTGTAAGTAAAAATATGTTTGAGACGATAGCCCGTGATCTTCTCTTGGAGAGAACTGATCACAGTCTCGAGGTGTATGAGGGTAGTGGCTCAAATTGGAGGCTGGTAAAGAGTGGAACCCCTGGAAATCTTGGCAGTTTTGAAGACATTTTGTTTGCAAACAATGAGATGCAGGATTCTCCAGTTATTGTTGCCTTAGTCCCAAGTTTTCGCGAAAATGGATGCATTATTGGGTTGGCCTACATTGATCTTAATAGAAGAGTGCTCGGTTTGGCTGAATTTCTTGATGATAGCCACTTTACAAATGCGGAGTCTGCCTTAGTTGCTCTTGGTTGCAAAGAATGCCTTTTGCCTTTAGATAGTGCTAAATCCAGTGACTGTAGACCTTTACTCGATGCAATGTCAAGATGTAGTGTGATGGTAACTGAAAGAAAGAAAACCGAGTTCAAACAAAAGGATTTGCTGCAGGATCTTGGTACGCTTGTAAAAGGTCCCACAGAACCAGTTCGAGATTTGGTCTCTGGGTTCGAATTTGCACCGGGGGCTTTGGGGTCGTTACTGTCTTATGCAGACTTACTTGCCGATGAGAGCAATTATGGAAACTACACTCTCCGACAGTACAATCTTGACAGCTACATGAGGTTAGATTCTGCGGCTATGAGGGCTCTAAATGTAATGGAGAGCAAAACTGATGCTAACAAAAATTTCAGCTTGTTCGGTCTAATGAATAGGACCTGTACTGCTGGGATGGGTAAACGATTACTTCACTTGTGGCTTAAACAGCCTTTACTGGATGTGTGTGAAATAAACTCTAGGCTGGATTTGGTACAAGCGTTCGTGGAAGATACTGCACTTCGCCAAGAACTGAGGCAGCATTTGAAAAGGATTTCGGATATTGAACGGTTGTTGCGCAATCTTGAGAAGAGGAGAGCTAGTTTGCTGCATATTGTAAAGCTTTATCAGTCCAGCATAAGACTTCCGTACATAAAAGGTGCCTTGGAACGGTATGCCGGACAGTTTGCTTCACTAATAAAAGAACGGTATTTGGATCCCCTAGAAATATGCACTGATGATGATCACTTGAATAAGTTCATTGGTCTTGTGGAAGCGTCTGTTGACCTTGATCAACTTGAGAATGGAGAGTACATGATTTCATCTGGTTACGACCCAAAGTTATCATCCCTAAAGAATGAGCAAGAGATACTGGAACAGCAAATACACAATTTGCATAAGCAAACAGCAAATGATCTTGATCTGGCTGTTGATAAGGCTTTGAAACTAGATAAAGGCACACAGTTTGGACATGTCTTTCGAATTACAAAGAAGGAAGAGCCAAAAGTGAGGAAGAAGCTCAATACCCATTATATTGTTCTTGACACTCGAAAGGATGGGATAAAGTTTACAAATACCAAGCTCAAGAAATTAGGAGACCAGTACCAAAAGATAGTTGAGGAATACAAGAACTGTCAGAAAGAGCTGGTTGCTAGAGTTGTTCAAACTGCCTCAACTTTTTCTGAGGTGTTTGAGAGTTTAGCTGTGCTGCTTTCTGAATTGGATGTCTTACTTAGTTTTGCTGATCTGGCTGCTAGTTGCCCCACTCCCTACACAAGACCAGACATCACCTCATCGGATGAGGGAGATATCATATTGGAGGCGAGTAGACATCCTTGCGTGGAAGCTCAAGATTGGGTTAATTTTATACCCAATGATTGTAAACTTGTTAGGGGAATGAGTTGGTTCCAAATTATCACAGGGCCCAACATGGGTGGAAAATCCACATTTATACGACAGGTTGGGGTGAACATCTTGATGGCACAAGTTGGTTCCTTTGTTCCTTGTGACAAAGCTAGTATTTCTGTTCGTGATTGCATTTTTGCTCGTGTGGGAGCTGGCGACTGTCAGTTACGTGGAGTCTCTACATTTATGCAAGAAATGCTTGAGACTGCTTCGATCTTGAAAGGAGCTACTGATAAGTCATTGATAATAATTGATGAATTGGGCCGTGGAACATCAACTTATGATGGATTTGGTCTAGCTTGGGCCATTTGTGAGCACCTTGTTGAAGTGATTAGAGCACCTACACTTTTTGCAACTCACTTTCATGAACTGACTGCATTAGCTCATGAAAATGCGGACAATGAACCTTCCAATAAAATTGTTGGTATAGCAAATTATCATGTTAGCGCACATATTGACTCATCAAGTCGCAAGCTAACTATGCTTTACAAGGTTGAACCAGGGGCCTGTGACCAAAGTTTTGGTATTCATGTAGCAGAGTTTGCAAATTTTCCAGAAAGTGTAGTTGCTCTTGCTAGAGAAAAAGCTGCAGAGTTGGAAGATTTTTCACCTATTGCTATCATTTCTAATGATGAAAAACAAGAGGTTGGATCTAAACGGAAGAGAGAGATTGAAGATGGGGATGCATCAAGAGGGGCAGGCCGGGCTCGGCAATTCTTGAAAGATTTCTCTGATTTGCCACTTGACAAAATGGACTTGAAGCAGGCTTTGCAACAAGTAAAGAAGTTGAAGAATGAACTGGAGAAAGATGCCGTGGACTGTCCCTGGCTCCGGCAATTCTCCTAG

Network for GWHGAAZE018064

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01624.21	MutS_I	23	128	2.20E-16
PF05188.18	MutS_II	143	283	1.20E-17
PF05192.19	MutS_III	300	606	2.60E-32
PF05190.19	MutS_IV	468	565	2.90E-19
PF00488.22	MutS_V	662	860	3.70E-81

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08735	MSH2	Mismatch repair	map03430

Gene Ontology

GO term	Ontology	Name
GO:0006298	biological_process	mismatch repair
GO:0005524	molecular_function	ATP binding
GO:0030983	molecular_function	mismatched DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.386
	SRR3591706	second leaf	3.053
	SRR3591707	mature leaf	5.612
	SRR3591708	Shoot apex	8.296
	SRR3591709	Stem	6.512
	SRR3591710	White floral bud	5.858
	SRR3591711	White flower	13.898
	SRR3591712	Green floral bud	6.299
	SRR3591713	Yellow flower	6.745
SRP173429	SRR8316895	Juvenile bud stage	3.780
	SRR8316896	Juvenile bud stage	5.113
	SRR8316897	Juvenile bud stage	1.683
	SRR8316894	Third green stage	2.102
	SRR8316900	Third green stage	4.622
	SRR8316901	Third green stage	3.771
	SRR8316898	Complete white stage	2.942
	SRR8316899	Complete white stage	5.539
	SRR8316903	Complete white stage	5.682
	SRR8316902	Silver flowering stage	4.474
	SRR8316904	Silver flowering stage	5.231
	SRR8316905	Silver flowering stage	2.329
	SRR8316906	Gold flowering stage	4.771
	SRR8316907	Gold flowering stage	7.676
	SRR8316908	Gold flowering stage	4.530
SRP132670	SRR6706286	Control	3.553
	SRR6706287	Light intensity 50%	3.956
	SRR6706288	Light intensity 20%	4.092
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.400
	CNS0095593	Slightly white alabastrum(diploid) 2	2.972
	CNS0095594	Slightly white alabastrum(diploid) 3	2.404
	CNS0095595	Whole white alabastrum(diploid) 2	2.604
	CNS0095596	Whole white alabastrum(diploid) 3	2.148
	CNS0095597	Whole white alabastrum(diploid) 4	1.892
	CNS0095598	Silvery flower (diploied) 1	4.771
	CNS0095599	Silvery flower (diploied) 2	5.054
	CNS0095600	Silvery flower (diploied) 3	7.168
	CNS0095601	Golden flower (diploid) 1	3.021
	CNS0095602	Golden flower (diploid) 2	5.194
	CNS0095603	Golden flower (diploid) 3	4.253
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.177
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.736
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.303
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.097
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.286
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.107
	CNS0095610	Silvery flower (tetraploid) 1	5.563
	CNS0095611	Silvery flower (tetraploid) 2	5.034
	CNS0095612	Silvery flower (tetraploid) 3	5.250
	CNS0095613	Golden flower (tetraploid) 1	1.463
	CNS0095614	Golden flower (tetraploid) 2	3.332
	CNS0095615	Golden flower (tetraploid) 3	4.343
CRA001975	CRR073297	Stem 1	4.918
	CRR073298	Stem 2	3.732
	CRR073299	Stem 3	4.148
	CRR073300	Leaf 1	3.046
	CRR073301	Leaf 2	3.012
	CRR073302	Leaf 3	3.382
	CRR073303	Juvenile bud 1	3.674
	CRR073304	Juvenile bud 2	1.528
	CRR073305	Juvenile bud 3	5.233
	CRR073306	Third green 1	1.423
	CRR073307	Third green 2	1.403
	CRR073308	Third green 3	1.873
	CRR073309	Second white 1	2.042
	CRR073310	Second white 2	2.529
	CRR073311	Second white 3	2.247
	CRR073312	Silver flowering 1	1.291
	CRR073313	Silver flowering 2	1.768
	CRR073314	Silver flowering 3	2.203
	CRR073315	Gold flowering 1	1.403
	CRR073316	Gold flowering 2	2.738
	CRR073317	Gold flowering 3	1.825
	CRR073318	Tawny withering 1	4.357
	CRR073319	Tawny withering 2	3.727
	CRR073320	Tawny withering 3	6.740