Gene detail

Detail information of GWHGAAZE018066

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002274167.1	4.1949E-139	PREDICTED: transcription factor DIVARICATA [Vitis vinifera]
Swissprot	tr\|Q8S9H7\|DIV_ANTMA	2E-53	Transcription factor DIVARICATA
trEMBL	tr\|F6GTI5\|F6GTI5_VITVI	2E-139	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43194.1}
TAIR10	AT1G49010.1	1E-43	Duplicated homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	14565271	14566489	+
GWHAAZE00000005	mRNA	14565271	14566489	+
GWHAAZE00000005	exon	14565271	14565695	+
GWHAAZE00000005	exon	14566024	14566489	+
GWHAAZE00000005	CDS	14565271	14565695	+
GWHAAZE00000005	CDS	14566024	14566489	+

Transcript Sequence
>GWHTAAZE018088 ATGTGGAGTAGAGAAGAAGAGAAAGCTTTCGAAAACGCGATTGCTACACACTGGATTGACGACTCCAAGGACCAACAACAACAAAAATTACAATGGAACAATATTGCTTCCATGGTTCCTACTAAGACCGTTGAAGAATTGAAACACCACCACCAATTACTCCTCGAAGATGTTAATGCTATCGAAGCTGGAATTGTACCGCTTCCCAAGTACATCGGAGAGGAACCATCCTCCTCCTCCTCCAAGGACCACCATGGTTTCTCCTCCGCTCTCACTACCTCCTCTGCCAGTAACAGGCGATCTAATTGTAATTTCAGCGCAGGTTTCTCAGGATTCGCTCATGAATCTACCAGTAAAGGAGGATTATCATCTAGGTCGGAGCAAGAGCGACGTAAAGGAATTCCATGGACAGAAGAAGAGCATAGGTTATTTTTGTTAGGTTTGGACAAATTTGGGAAAGGAGATTGGAGGAGTATATCTCGAAACTATGTAATATCAAGGACGCCAACACAAGTGGCAAGCCACGCGCAGAAGTATTTCATTAGATTGAACTCCATGAACAGAGATAGAAGAAGAACCAGCATACATGATATTACCAGCATCAACAATGGCGATGCTTCTTCTCATCAGGTCCCAATTACCGGCCAGCAGGCAAGCACAAATCCGGCAAACGGAGCGGTGATAGGACCACCGGTGAAGCGCCAGCAGCCTAACATCCCTGGATTGGGGATGTATGGTGCACCGGTGGGACATCCGGTTGCCGCTGCTCCAGGTCACATGCCTTCTGCCGTTGGGACTCCGGTCATGCTTCCACCAGGACACCACCATCACCACCCTTATGTAGTTCCAGTGGCCTATCCTATGGCTCCGCCACCGACTATGCACCAATAA

Network for GWHGAAZE018066

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	2	53	6.70E-06
PF00249.32	Myb_DNA-binding	135	179	1.50E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.191
	SRR3591706	second leaf	38.082
	SRR3591707	mature leaf	81.286
	SRR3591708	Shoot apex	28.812
	SRR3591709	Stem	26.856
	SRR3591710	White floral bud	10.361
	SRR3591711	White flower	10.008
	SRR3591712	Green floral bud	16.289
	SRR3591713	Yellow flower	1.622
SRP173429	SRR8316895	Juvenile bud stage	8.075
	SRR8316896	Juvenile bud stage	10.780
	SRR8316897	Juvenile bud stage	3.054
	SRR8316894	Third green stage	9.190
	SRR8316900	Third green stage	21.773
	SRR8316901	Third green stage	16.954
	SRR8316898	Complete white stage	4.131
	SRR8316899	Complete white stage	19.823
	SRR8316903	Complete white stage	6.813
	SRR8316902	Silver flowering stage	3.563
	SRR8316904	Silver flowering stage	4.232
	SRR8316905	Silver flowering stage	1.565
	SRR8316906	Gold flowering stage	6.113
	SRR8316907	Gold flowering stage	7.176
	SRR8316908	Gold flowering stage	4.988
SRP132670	SRR6706286	Control	32.987
	SRR6706287	Light intensity 50%	25.291
	SRR6706288	Light intensity 20%	29.798
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.967
	CNS0095593	Slightly white alabastrum(diploid) 2	14.870
	CNS0095594	Slightly white alabastrum(diploid) 3	11.955
	CNS0095595	Whole white alabastrum(diploid) 2	10.728
	CNS0095596	Whole white alabastrum(diploid) 3	12.393
	CNS0095597	Whole white alabastrum(diploid) 4	9.822
	CNS0095598	Silvery flower (diploied) 1	13.859
	CNS0095599	Silvery flower (diploied) 2	5.586
	CNS0095600	Silvery flower (diploied) 3	9.457
	CNS0095601	Golden flower (diploid) 1	7.532
	CNS0095602	Golden flower (diploid) 2	11.341
	CNS0095603	Golden flower (diploid) 3	11.722
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.061
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.271
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.316
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.671
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.484
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.241
	CNS0095610	Silvery flower (tetraploid) 1	12.060
	CNS0095611	Silvery flower (tetraploid) 2	11.353
	CNS0095612	Silvery flower (tetraploid) 3	3.101
	CNS0095613	Golden flower (tetraploid) 1	9.360
	CNS0095614	Golden flower (tetraploid) 2	10.861
	CNS0095615	Golden flower (tetraploid) 3	3.480
CRA001975	CRR073297	Stem 1	14.573
	CRR073298	Stem 2	12.823
	CRR073299	Stem 3	13.682
	CRR073300	Leaf 1	9.848
	CRR073301	Leaf 2	15.590
	CRR073302	Leaf 3	11.351
	CRR073303	Juvenile bud 1	11.901
	CRR073304	Juvenile bud 2	8.889
	CRR073305	Juvenile bud 3	11.669
	CRR073306	Third green 1	2.578
	CRR073307	Third green 2	1.517
	CRR073308	Third green 3	3.074
	CRR073309	Second white 1	2.437
	CRR073310	Second white 2	1.645
	CRR073311	Second white 3	2.568
	CRR073312	Silver flowering 1	1.128
	CRR073313	Silver flowering 2	1.931
	CRR073314	Silver flowering 3	1.607
	CRR073315	Gold flowering 1	18.644
	CRR073316	Gold flowering 2	23.342
	CRR073317	Gold flowering 3	24.893
	CRR073318	Tawny withering 1	20.588
	CRR073319	Tawny withering 2	12.471
	CRR073320	Tawny withering 3	13.343