Detail information of GWHGAAZE018079


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011097014.10PREDICTED: uncharacterized protein LOC105176035 [Sesamum indicum]
Swissprottr|Q8RXA7|SCD1_ARATH0DENN domain and WD repeat-containing protein SCD1 {ECO:0000305}
trEMBLtr|K4BMB4|K4BMB4_SOLLC0Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc03g119650.2.1}
TAIR10AT1G49040.10stomatal cytokinesis defective / SCD1 protein (SCD1)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1467518214694032-
GWHAAZE00000005mRNA1467518214694032-
GWHAAZE00000005exon1467518214675277-
GWHAAZE00000005exon1467621814676426-
GWHAAZE00000005exon1467719714677238-
GWHAAZE00000005exon1467741314677573-
GWHAAZE00000005exon1467766314677734-
GWHAAZE00000005exon1467803614678217-
GWHAAZE00000005exon1467922114679344-
GWHAAZE00000005exon1467948414679548-
GWHAAZE00000005exon1467963114679827-
GWHAAZE00000005exon1467998914680199-
GWHAAZE00000005exon1468086714680950-
GWHAAZE00000005exon1468104214681099-
GWHAAZE00000005exon1468191514682005-
GWHAAZE00000005exon1468222914682385-
GWHAAZE00000005exon1468248714682537-
GWHAAZE00000005exon1468261514682688-
GWHAAZE00000005exon1468282714682902-
GWHAAZE00000005exon1468422914684273-
GWHAAZE00000005exon1468437114684434-
GWHAAZE00000005exon1468457314684696-
GWHAAZE00000005exon1468482014685015-
GWHAAZE00000005exon1468529814685402-
GWHAAZE00000005exon1468549714685551-
GWHAAZE00000005exon1468684014687060-
GWHAAZE00000005exon1468745314687566-
GWHAAZE00000005exon1468816614688229-
GWHAAZE00000005exon1468896214689062-
GWHAAZE00000005exon1468918514689326-
GWHAAZE00000005exon1468965414689699-
GWHAAZE00000005exon1468986714690064-
GWHAAZE00000005exon1469262814692721-
GWHAAZE00000005exon1469385914694032-
GWHAAZE00000005CDS1469385914694032-
GWHAAZE00000005CDS1469262814692721-
GWHAAZE00000005CDS1468986714690064-
GWHAAZE00000005CDS1468965414689699-
GWHAAZE00000005CDS1468918514689326-
GWHAAZE00000005CDS1468896214689062-
GWHAAZE00000005CDS1468816614688229-
GWHAAZE00000005CDS1468745314687566-
GWHAAZE00000005CDS1468684014687060-
GWHAAZE00000005CDS1468549714685551-
GWHAAZE00000005CDS1468529814685402-
GWHAAZE00000005CDS1468482014685015-
GWHAAZE00000005CDS1468457314684696-
GWHAAZE00000005CDS1468437114684434-
GWHAAZE00000005CDS1468422914684273-
GWHAAZE00000005CDS1468282714682902-
GWHAAZE00000005CDS1468261514682688-
GWHAAZE00000005CDS1468248714682537-
GWHAAZE00000005CDS1468222914682385-
GWHAAZE00000005CDS1468191514682005-
GWHAAZE00000005CDS1468104214681099-
GWHAAZE00000005CDS1468086714680950-
GWHAAZE00000005CDS1467998914680199-
GWHAAZE00000005CDS1467963114679827-
GWHAAZE00000005CDS1467948414679548-
GWHAAZE00000005CDS1467922114679344-
GWHAAZE00000005CDS1467803614678217-
GWHAAZE00000005CDS1467766314677734-
GWHAAZE00000005CDS1467741314677573-
GWHAAZE00000005CDS1467719714677238-
GWHAAZE00000005CDS1467621814676426-
GWHAAZE00000005CDS1467518214675277-
Transcript Sequence

Network for GWHGAAZE018079

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03456.19uDENN351032.60E-11
PF02141.22DENN1243208.60E-45
PF00400.33WD408719190.0002
PF00400.33WD409299610.005
PF00400.33WD4096610020.0011
PF00400.33WD40104910840.0018
PF00400.33WD40108911250.21
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf28.733
SRR3591706second leaf16.808
SRR3591707mature leaf12.538
SRR3591708Shoot apex22.263
SRR3591709Stem22.699
SRR3591710White floral bud18.900
SRR3591711White flower18.035
SRR3591712Green floral bud21.123
SRR3591713Yellow flower15.536
SRP173429 SRR8316895Juvenile bud stage 15.726
SRR8316896Juvenile bud stage 21.905
SRR8316897Juvenile bud stage 12.150
SRR8316894Third green stage 9.775
SRR8316900Third green stage 20.415
SRR8316901Third green stage 19.585
SRR8316898Complete white stage 6.021
SRR8316899Complete white stage 17.802
SRR8316903Complete white stage 12.058
SRR8316902Silver flowering stage6.597
SRR8316904Silver flowering stage9.069
SRR8316905Silver flowering stage4.139
SRR8316906Gold flowering stage 14.318
SRR8316907Gold flowering stage 13.946
SRR8316908Gold flowering stage 17.015
SRP132670SRR6706286Control22.850
SRR6706287Light intensity 50%22.244
SRR6706288Light intensity 20%23.104
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.553
CNS0095593Slightly white alabastrum(diploid) 213.111
CNS0095594Slightly white alabastrum(diploid) 314.656
CNS0095595Whole white alabastrum(diploid) 211.841
CNS0095596Whole white alabastrum(diploid) 310.240
CNS0095597Whole white alabastrum(diploid) 49.678
CNS0095598Silvery flower (diploied) 116.633
CNS0095599Silvery flower (diploied) 212.233
CNS0095600Silvery flower (diploied) 318.291
CNS0095601Golden flower (diploid) 111.920
CNS0095602Golden flower (diploid) 219.559
CNS0095603Golden flower (diploid) 318.640
CNS0095604Slightly white alabastrum(tetraploid) 120.197
CNS0095605Slightly white alabastrum(tetraploid) 215.834
CNS0095606Slightly white alabastrum(tetraploid) 336.040
CNS0095607Whole white alabastrum(tetraploid) 114.471
CNS0095608Whole white alabastrum(tetraploid) 211.451
CNS0095609Whole white alabastrum(tetraploid) 327.177
CNS0095610Silvery flower (tetraploid) 121.382
CNS0095611Silvery flower (tetraploid) 219.798
CNS0095612Silvery flower (tetraploid) 319.325
CNS0095613Golden flower (tetraploid) 110.692
CNS0095614Golden flower (tetraploid) 218.556
CNS0095615Golden flower (tetraploid) 313.570
CRA001975CRR073297Stem 121.925
CRR073298Stem 221.884
CRR073299Stem 317.045
CRR073300Leaf 122.859
CRR073301Leaf 219.815
CRR073302Leaf 315.816
CRR073303Juvenile bud 116.187
CRR073304Juvenile bud 29.975
CRR073305Juvenile bud 321.021
CRR073306Third green 17.035
CRR073307Third green 25.140
CRR073308Third green 37.425
CRR073309Second white 16.967
CRR073310Second white 28.285
CRR073311Second white 39.740
CRR073312Silver flowering 17.079
CRR073313Silver flowering 26.833
CRR073314Silver flowering 38.135
CRR073315Gold flowering 15.565
CRR073316Gold flowering 28.352
CRR073317Gold flowering 35.469
CRR073318Tawny withering 114.402
CRR073319Tawny withering 213.438
CRR073320Tawny withering 318.460