Gene detail

Detail information of GWHGAAZE018086

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO98435.1	3.3913E-149	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8RWD0\|COL16_ARATH	2E-95	Zinc finger protein CONSTANS-LIKE 16
trEMBL	tr\|A0A068TQ36\|A0A068TQ36_COFCA	1E-149	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO98435.1}
TAIR10	AT1G25440.1	2E-78	B-box type zinc finger protein with CCT domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	14845055	14846499	+
GWHAAZE00000005	mRNA	14845055	14846499	+
GWHAAZE00000005	exon	14845055	14846008	+
GWHAAZE00000005	exon	14846254	14846499	+
GWHAAZE00000005	CDS	14845055	14846008	+
GWHAAZE00000005	CDS	14846254	14846499	+

Transcript Sequence
>GWHTAAZE018108 ATGATCACCGAAACCAAAGCGGCCAATGCGGTCGGGGCCAAGACCGCGAGAGCATGCGACAGCTGCTTGCACAAACGCGCTCGTTGGTACTGCGCTTCTGACGATGCTTTCCTTTGCAGAGGCTGCGATGGCTCGGTCCACTCGGCTAACCAGCTGGCGAGCAGGCACGAGCGAGTCCGGCTTGGCACAGCCTCTTTTAAAGCCACTGCAAATAAGGCCAATTCTCCACCTGCTTGGCACCACGGCTTCACCCGTAAGCCAAGAACCCAGCGTCAACGGAAGGACAAACAAAGTATAGCAGCCACATATACTTCTCCAATGGTCCCGGAGATTGGTAGCGAAGAAGCATCCAATGATGACAGCGAAGAGCAGCTTCTTTACCGGGTTCCGGTCTTTGATCCTTTTGATGCGGAGCTATGTGAAGCATTTCATCAAAACATTGCCCATGGTGTGCGGCAACTGAATGGTACTAATGGACATATTGAGCAGTGTGATTTCGACAATCTTAATGGGTTTCTCCAATCTGATACGGAGCTTGCAGAGTTTGCTGCTGATGTTGAAAGCTTATTAGGAACCGGACTGGACGATGATTCATGTGGGATCGAAGAGTTAGGGCTGATGGATGGTAAAGAAGTAGATTGTTTTGGTGGGAACAAAATGAAGGTTGAAGATGAGGAAGCGGAAGCTATTATAGCTTGTTCTTTGGATCCGACCATCGATGTGACGAGAGAAATGATAGATTGGAACTTCGATTATGAGGAGGAAGAGGAAGAGAAGGCGGTTGTGGTACCAGAGGCAAAGATGATGAAGGGTGAAAATAAAGAAGTGCAGAGGAAAATTCTTTTAAGGCTTAACTATGAAGAAGTCATGACTGCTTGGGACAATCAACGTTGTCCGTGGACAACTGGATGCCGGCCGGAGTTTAACCCTGATGATTGTTGGCCGGATTTCATGGGTATTTACGGAGTGGGTGTTCATCAACCCTACGGAGGCGTAGGGGGACGCATAGATGAGGGGAGAGAAGCAAGAGTGTCAAGGTACAGAGAAAAGAGAAGGACAAGATTGTTCTCAAAGAAGATAAGGTATGAAGTGAGGAAGCTGAACGCAGAGAAGAGGCCTAGAATGAAAGGAAGGTTTGTTAAGAGGACTTCTTTTGTAGGTGGAGGACCCTCTTTTCCCCAGTATGTACTCAACAAATAA

Network for GWHGAAZE018086

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00643.25	zf-B_box	16	59	1.40E-06
PF06203.15	CCT	340	382	9.40E-18

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-CO-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	molecular_function	zinc ion binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.478
	SRR3591706	second leaf	215.336
	SRR3591707	mature leaf	314.479
	SRR3591708	Shoot apex	64.124
	SRR3591709	Stem	6.602
	SRR3591710	White floral bud	0.257
	SRR3591711	White flower	0.635
	SRR3591712	Green floral bud	4.123
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	2.738
	SRR8316896	Juvenile bud stage	8.368
	SRR8316897	Juvenile bud stage	1.027
	SRR8316894	Third green stage	3.913
	SRR8316900	Third green stage	6.832
	SRR8316901	Third green stage	5.148
	SRR8316898	Complete white stage	0.036
	SRR8316899	Complete white stage	0.799
	SRR8316903	Complete white stage	0.015
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	6.881
	SRR6706287	Light intensity 50%	7.964
	SRR6706288	Light intensity 20%	10.466
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.287
	CNS0095593	Slightly white alabastrum(diploid) 2	2.152
	CNS0095594	Slightly white alabastrum(diploid) 3	1.651
	CNS0095595	Whole white alabastrum(diploid) 2	2.154
	CNS0095596	Whole white alabastrum(diploid) 3	3.627
	CNS0095597	Whole white alabastrum(diploid) 4	1.959
	CNS0095598	Silvery flower (diploied) 1	1.116
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.050
	CNS0095601	Golden flower (diploid) 1	1.112
	CNS0095602	Golden flower (diploid) 2	0.365
	CNS0095603	Golden flower (diploid) 3	0.335
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.728
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.819
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.091
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.649
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.598
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.160
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.940
	CNS0095612	Silvery flower (tetraploid) 3	0.088
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.038
CRA001975	CRR073297	Stem 1	32.812
	CRR073298	Stem 2	22.331
	CRR073299	Stem 3	42.976
	CRR073300	Leaf 1	6.657
	CRR073301	Leaf 2	8.974
	CRR073302	Leaf 3	10.437
	CRR073303	Juvenile bud 1	2.324
	CRR073304	Juvenile bud 2	2.798
	CRR073305	Juvenile bud 3	0.993
	CRR073306	Third green 1	0.038
	CRR073307	Third green 2	0.054
	CRR073308	Third green 3	0.066
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.004
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.023
	CRR073315	Gold flowering 1	74.413
	CRR073316	Gold flowering 2	77.175
	CRR073317	Gold flowering 3	72.374
	CRR073318	Tawny withering 1	0.565
	CRR073319	Tawny withering 2	0.520
	CRR073320	Tawny withering 3	0.043