Gene detail

Detail information of GWHGAAZE018093

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002276526.3	1.6104E-117	PREDICTED: transcription factor MYB108 [Vitis vinifera]
Swissprot	tr\|Q9LDE1\|MY108_ARATH	6E-59	Transcription factor MYB108
trEMBL	tr\|D7SJ03\|D7SJ03_VITVI	8E-118	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI15464.3}
TAIR10	AT1G25340.1	4E-64	myb domain protein 116

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	14996597	14998402	+
GWHAAZE00000005	mRNA	14996597	14998402	+
GWHAAZE00000005	exon	14996597	14996773	+
GWHAAZE00000005	exon	14996891	14997020	+
GWHAAZE00000005	exon	14997608	14998402	+
GWHAAZE00000005	five_prime_UTR	14996597	14996613	+
GWHAAZE00000005	CDS	14996614	14996773	+
GWHAAZE00000005	CDS	14996891	14997020	+
GWHAAZE00000005	CDS	14997608	14998208	+
GWHAAZE00000005	three_prime_UTR	14998209	14998402	+

Transcript Sequence
>GWHTAAZE018115 TTGGCTAAAAATCTTTCATGTCTACTATGACAAAGAGTGCAAGTAGTTGTAGCGATGAAGATTTGGTTGATGATGAGCTTAGAAGAGGTCCATGGACTGTTGAAGAAGATACTCTCCTTATTCACTACATCCATTGCCATGGCGAAGGCCGTTGGAATTTGCTAGCCAAGCGTTCTGGATTGAAGAGGAGTGGGAAGAGCTGTAGACTGAGATGGCTGAATTATTTGAAACCAGATGTGAAGCGAGGAAACCTTAGTCCGCAAGAACAGCTTTTGATACTTGAACTTCATTTCAAGTGGGGTAACAGGTGGTCAAAAATTGCACAACATTTACCGGGCAGAACAGACAATGAAATCAAGAACTACTGGAGAACTCGCGTACAAAAACAGGCAAGGCACCTCAAGATCGATTCAAACAGCACTGCGTTTAAAGAAGTGATTAGGTGCCTTTGGATGCCCCATTTGCTTCAAAAAATCCACGGATCTGCTCCTCTAGACCCGCATTTCAAGAATTCACTGGGGACTCTGCCACTCAATGAATCACCACCGCCGCTTCCGCTGCAAGTTCCTCTAGATTCAAGCCGTGTTAATCATCAGAAAAATTCTAGCTCAGATAACTGTACCAGCCCAAGCATTTGTTCTTCAGATCAATCTATGAATTTTTCACAATTCCCTACTGACATTACCGATTATCTAACAAATCCATTTAGTAGCATGGATAATAGCTATGACATGGGAACCTTCGGTCTAGATGCTGCATCGTCAGTAATGGGTGAATTCGTGGAGCCAATGGGTGATCGCCACGTGATGGAAAATAATTGGATTGGCGATGATGAAGTGGCAGATAGTTTGTGGAATATGGATGAATTATGGCAGCTACAGCAGAGGGGCAACCAGCTCGAGTACTAATTGTTGCTTAGAAAGATTAGATTCTTTTTTTGAAGAAAATAATTTTGTTAAGGGAATTTAATTTTCTAAATCCAGTGAAAGAAGGGAAAAAAGGCCCATTACTAGTTAGTGCTTTTTACACAGTTGATTTGTACGCATGAGAAGAAGTTATTTGTGTTTATGACAGAATCTACTTGGTAATTATGTGAAATTAA

Network for GWHGAAZE018093

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	23	70	2.30E-15
PF00249.32	Myb_DNA-binding	76	119	2.20E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.685
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.132
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.632
	SRR3591710	White floral bud	0.368
	SRR3591711	White flower	25.184
	SRR3591712	Green floral bud	0.263
	SRR3591713	Yellow flower	53.620
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.200
	SRR8316901	Third green stage	0.085
	SRR8316898	Complete white stage	0.414
	SRR8316899	Complete white stage	0.770
	SRR8316903	Complete white stage	0.237
	SRR8316902	Silver flowering stage	4.075
	SRR8316904	Silver flowering stage	4.094
	SRR8316905	Silver flowering stage	3.492
	SRR8316906	Gold flowering stage	28.824
	SRR8316907	Gold flowering stage	28.211
	SRR8316908	Gold flowering stage	46.548
SRP132670	SRR6706286	Control	0.305
	SRR6706287	Light intensity 50%	0.170
	SRR6706288	Light intensity 20%	0.074
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.475
	CNS0095593	Slightly white alabastrum(diploid) 2	0.490
	CNS0095594	Slightly white alabastrum(diploid) 3	1.291
	CNS0095595	Whole white alabastrum(diploid) 2	0.569
	CNS0095596	Whole white alabastrum(diploid) 3	0.639
	CNS0095597	Whole white alabastrum(diploid) 4	1.159
	CNS0095598	Silvery flower (diploied) 1	4.335
	CNS0095599	Silvery flower (diploied) 2	5.390
	CNS0095600	Silvery flower (diploied) 3	17.510
	CNS0095601	Golden flower (diploid) 1	10.655
	CNS0095602	Golden flower (diploid) 2	35.831
	CNS0095603	Golden flower (diploid) 3	38.465
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.305
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.600
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.189
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.725
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.540
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.436
	CNS0095610	Silvery flower (tetraploid) 1	28.923
	CNS0095611	Silvery flower (tetraploid) 2	14.916
	CNS0095612	Silvery flower (tetraploid) 3	6.965
	CNS0095613	Golden flower (tetraploid) 1	33.116
	CNS0095614	Golden flower (tetraploid) 2	38.915
	CNS0095615	Golden flower (tetraploid) 3	24.603
CRA001975	CRR073297	Stem 1	0.234
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.260
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.076
	CRR073304	Juvenile bud 2	0.152
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.107
	CRR073308	Third green 3	0.018
	CRR073309	Second white 1	3.751
	CRR073310	Second white 2	4.526
	CRR073311	Second white 3	5.062
	CRR073312	Silver flowering 1	10.755
	CRR073313	Silver flowering 2	10.581
	CRR073314	Silver flowering 3	15.140
	CRR073315	Gold flowering 1	0.002
	CRR073316	Gold flowering 2	1.280
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	13.833
	CRR073319	Tawny withering 2	12.729
	CRR073320	Tawny withering 3	5.199