Gene detail

Detail information of GWHGAAZE018101

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010663612.1	0	PREDICTED: AP-3 complex subunit delta isoform X1 [Vitis vinifera]
Swissprot	tr\|Q9C744\|AP3D_ARATH	0	AP-3 complex subunit delta
trEMBL	tr\|F6GTN6\|F6GTN6_VITVI	0	AP-3 complex subunit delta {ECO:0000256\|PIRNR:PIRNR037092}
TAIR10	AT1G48760.3	3E-173	delta-adaptin

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	15097116	15100053	+
GWHAAZE00000005	mRNA	15097116	15100053	+
GWHAAZE00000005	exon	15097116	15097539	+
GWHAAZE00000005	exon	15097625	15100053	+
GWHAAZE00000005	CDS	15097116	15097539	+
GWHAAZE00000005	CDS	15097625	15100053	+

Transcript Sequence
>GWHTAAZE018123 ATGCTGCGTAGTAGAAAGGAGAAAGGTTTGGTGGCAATTGGATCAATGGCAGGTCCATCACTAATGGACTCTCTCTTCCAGCGCACCCTAGAGGACTTAATCAAGGGCCTCCGCCTTCACCTCCCCGGCGGCGAGTCCTCCTTCATCTCTAAATCCGTCGACGAGATCCGCCGCGAGATCAAATCCACCGACTTACAGACCAAATCCACCGCCCTCCAAAAACTCACCTACCTTCCACTCCCTCCATGGACTCGACATGTCCTTCGCCGCCTTCCACGCCGTCGAACTCACCTCATCCCATTCCTTCTCCCACAAAAAAATAGGATACCTCGCCGTCTCTCTCTCCTTTACTTCCTCCACCGACGTTCTCCTCCTCCTAACCAACCAGCTCCGCAAGGATCTATCTTCCACCAACGAATTCGAGGGAGTAATAAGAATTTCGTTAAGAAGAAAGCAATTGCCATGATTTTGAGGCTTTTTAGTCAGTATCCGGATGCGGTTAGGGTTTGTTTTAAGCGACTGGTGGAGAATATGGAGGGGCCTGATGTTCAAATTGTATCGTCTACTGTTAGTGTCTTTTGCGAGCTCGCGGATAGGGATCCGAAATCCTATCTCCCTTTAGCGCCGGAGTTTTATAAAATTTTGTTGGATAGTAGGAATAATTGGGTTTTGATTAAAGTTTTGAAGGTTTTTGCAAAGTTGGCTCCGTTAGAGCCGAGGTTATCGAGGAAGGTGGTGGAGCCAATTTGTGAGCATATGAGGAGGACAGGGGCCAAGTCTTTGGTATTTGAGTGCGTTAGGACGATAGTGACTAGCTTGAGTGAGTATGAATCTGCGGTGAAACTTGCTGTTGAGAGGATTAGGGAGTTTTTAGTCGACGATGATCCGAATCTCAAGTATCTTGGATTGCAAGCACTTTTGGTTGTTGCACCAAAGCACTTGTGGGCGGTGCTGGAGAATAAGGATGTTGTGATTAAATCTCTGAGTGATGCTGATCCCAATGTTAAGCTTGAGGCCTTGCGGCTGGTTATGGCAATGGTGTCCGAGGACAACGTGACTGAAATCTGCAGGGTTTTGATCAATTATGCACTTAAATCTGATCCAGAGTTCTGTAACGAGATTCTTGGGTCCATACTATCAACTTGCAGTAGAAGTGTTTACGAGATAATTATTGATTTTGATTGGTACGTATTGCTTCTTGGGGAAATGTCAAGGATACCACATTGCCAAAAGGGAGAACAAATTGAGAACCAGCTAATAGATATTGGTATGAGGGTCAAAGACGTTAGACCAGAGCTTGTTCGTGTTGGTTGTGGATTACTGATTGATCCGGCATTGCTTGGAAATCCTTTCATTCATCGGATATTATCAGCAGCTGCTTGGGTGTCCGGGGAATATGTTGAATTCTCCAGGAATCCATTTGAGCTAATGGAAGCCTTGTTACAACCACGTACGAATCTCTTGCCGCCATCAATAAGAGCTGTGTATATTCAGTCTGCTCTTAAAACGTTGACCTTTTGCATATATTCTTATCTCATTCCAAAAGAAGCTGCGTTTTGTCCTATTGACTTGCGAACCGGAGAGGCAAATTCAGTATTTGAAATAGACGGTCCGGAAGATTCAGATTTGGTAGCATGTGATCCTCCTGCTGACTTTAAGCTGGATGAGGAGTTCAACCCAAGGGTTTTAAGTCAACCAGCTGAAGTTTCTTTGGTAGAAAATGATTGTACATTTGCTACTCATGGGGAGACCTCATCTTCAGCTCATCTAAATAAGGATCTTTTTACTCAAGAATCCATTGTTAACCTGTTAAATCTTGTTGAAACTGCTCTAGGTCCATTGGCAGGAAGCCATGAGGTGGAAATACAAGAGAGGGTGCGGAATATTCTTGGTTTAGTTGAGTTGATGAAGCGGGAACTACCTGGTTGTTTTGTTCAGAAGGAGGGGAATTTCGAAAGGGAAGAATTAAAAGTGCGAGAGATGGTTAAACTGATGTATGATGCCTTCTCTGAGGATCTTGGTCCTGTTTCATTGAGTGCTCAAGAAAGGGTACCCATACCAGAAGGAATAATGCTCGAGGAGAATCTCAACAACTTGGAAACAATATGTGGCGATATTCAATTGCCTATATATAGTTCTTTCTCCCTGGGAAAGCCTAATTATGTGGGTGGGGATAGTGTTTCCATCTCTAACTGCCAGAACAAGGAAGAATCTGATTCATCTGCAGAGCCATCTCTACTTGCTGAACATCGCAAGCGGCATGGGTTATACTATCTTCCGCCAGAGAAAAAAGAGGAAGTATCCCCTGATTACCCCCCTGCCAATGAACCTAAGCTGCAAAGTAATGTCAATGATGATACTGAATATCTTGTTAAGCTCACAGATCGTTCACTTGTCCCAAAGAAAAAGTCAAACCAAGCAAAGCCAAGGCCTGTGGTGGTAAAATTGGATGAGGGAGATGTGGTTCCTATTGCAGCCAAGAAACCTGTGTCGAAAGATGATATGATATCTGGAGCCGTACGAGATGTTCTTTTAGGTAATGAGGCCATACCTTCATTACAAAGCAATACAAGGGGAAAAGAGAAGTTAAATATTGTTCAAGATCCCAAATTGAAGGAAAATATTGCTAATGAGGCGAAGTCCGAGCTTGGAACTTCGAGTTCAAGAAGAAGCAAACACCCTAGTCATGGTGAAGATAGAAAACATAGAAGCCGGGAAAAGAATGTTGAGGGAAGAGAAGGCACAAAGCAGAAGAGTGGTCACCGCCGCAGCAGGCATAGAGCACGGCAAAGAGAAGAGGTGGGTTTGAATGTGGTTGCACAAACACCAGTAATTCCTGATTTTCTTTTGTAG

Network for GWHGAAZE018101

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01602.21	Adaptin_N	143	479	2.20E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12396	AP3D	Lysosome	map04142

Gene Ontology

GO term	Ontology	Name
GO:0015031	biological_process	protein transport
GO:0006886	biological_process	intracellular protein transport
GO:0016192	biological_process	vesicle-mediated transport
GO:0030123	cellular_component	AP-3 adaptor complex
GO:0030117	cellular_component	membrane coat

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.037
	SRR3591706	second leaf	7.652
	SRR3591707	mature leaf	6.725
	SRR3591708	Shoot apex	11.823
	SRR3591709	Stem	12.995
	SRR3591710	White floral bud	17.040
	SRR3591711	White flower	15.135
	SRR3591712	Green floral bud	17.244
	SRR3591713	Yellow flower	12.685
SRP173429	SRR8316895	Juvenile bud stage	8.644
	SRR8316896	Juvenile bud stage	13.620
	SRR8316897	Juvenile bud stage	5.639
	SRR8316894	Third green stage	5.799
	SRR8316900	Third green stage	19.983
	SRR8316901	Third green stage	16.031
	SRR8316898	Complete white stage	7.312
	SRR8316899	Complete white stage	20.531
	SRR8316903	Complete white stage	15.084
	SRR8316902	Silver flowering stage	6.121
	SRR8316904	Silver flowering stage	10.719
	SRR8316905	Silver flowering stage	4.710
	SRR8316906	Gold flowering stage	13.240
	SRR8316907	Gold flowering stage	13.575
	SRR8316908	Gold flowering stage	15.467
SRP132670	SRR6706286	Control	11.933
	SRR6706287	Light intensity 50%	13.731
	SRR6706288	Light intensity 20%	14.178
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.353
	CNS0095593	Slightly white alabastrum(diploid) 2	13.357
	CNS0095594	Slightly white alabastrum(diploid) 3	11.350
	CNS0095595	Whole white alabastrum(diploid) 2	11.748
	CNS0095596	Whole white alabastrum(diploid) 3	11.850
	CNS0095597	Whole white alabastrum(diploid) 4	12.395
	CNS0095598	Silvery flower (diploied) 1	11.678
	CNS0095599	Silvery flower (diploied) 2	10.204
	CNS0095600	Silvery flower (diploied) 3	21.764
	CNS0095601	Golden flower (diploid) 1	9.219
	CNS0095602	Golden flower (diploid) 2	18.335
	CNS0095603	Golden flower (diploid) 3	18.325
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.062
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.163
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.660
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.789
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.619
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.055
	CNS0095610	Silvery flower (tetraploid) 1	19.998
	CNS0095611	Silvery flower (tetraploid) 2	20.525
	CNS0095612	Silvery flower (tetraploid) 3	25.777
	CNS0095613	Golden flower (tetraploid) 1	11.978
	CNS0095614	Golden flower (tetraploid) 2	18.314
	CNS0095615	Golden flower (tetraploid) 3	20.684
CRA001975	CRR073297	Stem 1	17.055
	CRR073298	Stem 2	16.214
	CRR073299	Stem 3	15.752
	CRR073300	Leaf 1	19.627
	CRR073301	Leaf 2	18.250
	CRR073302	Leaf 3	14.665
	CRR073303	Juvenile bud 1	20.205
	CRR073304	Juvenile bud 2	17.098
	CRR073305	Juvenile bud 3	25.386
	CRR073306	Third green 1	16.156
	CRR073307	Third green 2	12.403
	CRR073308	Third green 3	16.100
	CRR073309	Second white 1	14.085
	CRR073310	Second white 2	12.618
	CRR073311	Second white 3	11.705
	CRR073312	Silver flowering 1	11.570
	CRR073313	Silver flowering 2	13.454
	CRR073314	Silver flowering 3	10.741
	CRR073315	Gold flowering 1	4.664
	CRR073316	Gold flowering 2	9.231
	CRR073317	Gold flowering 3	7.137
	CRR073318	Tawny withering 1	12.058
	CRR073319	Tawny withering 2	9.406
	CRR073320	Tawny withering 3	13.613