Gene detail

Detail information of GWHGAAZE018110

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002279751.1	4.6953E-144	PREDICTED: uncharacterized protein LOC100245764 [Vitis vinifera]
Swissprot	tr\|Q9ZQF9\|MBR1_ARATH	5E-35	E3 ubiquitin-protein ligase MBR1
trEMBL	tr\|F6GTP6\|F6GTP6_VITVI	2E-144	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43242.1}
TAIR10	AT1G73760.1	2E-46	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	15304437	15307550	+
GWHAAZE00000005	mRNA	15304437	15307550	+
GWHAAZE00000005	exon	15304437	15304940	+
GWHAAZE00000005	exon	15305911	15306069	+
GWHAAZE00000005	exon	15307036	15307293	+
GWHAAZE00000005	exon	15307416	15307550	+
GWHAAZE00000005	CDS	15304437	15304940	+
GWHAAZE00000005	CDS	15305911	15306069	+
GWHAAZE00000005	CDS	15307036	15307293	+
GWHAAZE00000005	CDS	15307416	15307550	+

Transcript Sequence
>GWHTAAZE018132 ATGCCTGTTGTAGTTAGTGAGAGAGCAACAATTGCAGATCACATTGGGTATAGAAGACCCAAAAACCCACCCATTTCTGACCCAGATCCGAGTCCCCCACCAATCCCTTCCATCATTCAATCCACTCGCTGTAAATCCAACATTTCCTCTCTCCTCCTCTCCACATTTAACCCTAATTCAAGCAGTGAGAATAAGAAGAAGAACTTCACAGCTGCGAAATTCAGGGGGCTGGGGTGTGCAGCCCCGCCGCAGGTATCGGTGCCGGCTGTGATCCGGTCGTCGGCGAACTGGGAAGCAAAGAAGGTGAGGAAGAAAAAACAGAGGAGTACGAAGAACAAGATACCCAATCAAGATTTGGATTCCGGTTCTCCTTCTGTGGTGGTGGTTCCTGATGTTTGGTGTGGGCCTGGGATTGGGTTCACTACAGATGCTGCTTCTGTTGATTGTGTTGTATCAAGAAGAGGAAGGGGGAAAGTTGATGGGGTCAAGATTAATCAGAGGGAGCGATCTTCTTCATATGCTGCAAGGAGAATGGTGAACCCTGAAGACATTTCTTTTTTCGATGCTGAGCCTGCATTCGGAATGCCTCACCCTCCGTTAGATGTATTTGGATCCCGAAATAATGGTCATGTTCGAAACCGTTCTCCCGAAGGGCTGGCAGAGATTGTGATGCTCCAAAGTAGCTTGATGATGGGAGGAAGGTCAGATGGACTACTTGATCGATACAGAGACTTGAGACTTGATGTCGATAACATGTCCTACGAAGAATTGCTTGAGCTTGGTGAGAGAATTGGACATGTAAGCACCGGTTTAAGAGAAGATGAGATAATCCACTGTCTCAGGAAAACGAAGGTCTCTAGTTTGGGTGATTTGTCATCACATTTTGCATCAAAAATTCAATGGAAGTGCAGCATCTGTCAGGAGGAGTATGAAGTAGATGATGAGATGGGCAAACTGAATTGTGGACACTTTTATCACATCAATTGCATAAAGCAATGGCTTGTGCAGAAAAATGCTTGCCCTATTTGTAAAACTGAGGTCTTGTCTCAACAATAG

Network for GWHGAAZE018110

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.7	zf-RING_2	302	344	1.70E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	52.348
	SRR3591706	second leaf	41.647
	SRR3591707	mature leaf	27.856
	SRR3591708	Shoot apex	49.273
	SRR3591709	Stem	31.944
	SRR3591710	White floral bud	61.496
	SRR3591711	White flower	69.860
	SRR3591712	Green floral bud	36.823
	SRR3591713	Yellow flower	50.858
SRP173429	SRR8316895	Juvenile bud stage	19.440
	SRR8316896	Juvenile bud stage	17.686
	SRR8316897	Juvenile bud stage	9.264
	SRR8316894	Third green stage	10.555
	SRR8316900	Third green stage	25.374
	SRR8316901	Third green stage	27.557
	SRR8316898	Complete white stage	24.815
	SRR8316899	Complete white stage	27.162
	SRR8316903	Complete white stage	30.609
	SRR8316902	Silver flowering stage	25.817
	SRR8316904	Silver flowering stage	32.954
	SRR8316905	Silver flowering stage	14.080
	SRR8316906	Gold flowering stage	48.914
	SRR8316907	Gold flowering stage	46.900
	SRR8316908	Gold flowering stage	61.228
SRP132670	SRR6706286	Control	19.199
	SRR6706287	Light intensity 50%	22.660
	SRR6706288	Light intensity 20%	24.977
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.204
	CNS0095593	Slightly white alabastrum(diploid) 2	16.496
	CNS0095594	Slightly white alabastrum(diploid) 3	16.152
	CNS0095595	Whole white alabastrum(diploid) 2	15.703
	CNS0095596	Whole white alabastrum(diploid) 3	14.339
	CNS0095597	Whole white alabastrum(diploid) 4	12.692
	CNS0095598	Silvery flower (diploied) 1	21.725
	CNS0095599	Silvery flower (diploied) 2	19.199
	CNS0095600	Silvery flower (diploied) 3	31.865
	CNS0095601	Golden flower (diploid) 1	13.089
	CNS0095602	Golden flower (diploid) 2	25.514
	CNS0095603	Golden flower (diploid) 3	22.533
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.712
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.174
	CNS0095606	Slightly white alabastrum(tetraploid) 3	38.137
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.327
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.993
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.099
	CNS0095610	Silvery flower (tetraploid) 1	34.301
	CNS0095611	Silvery flower (tetraploid) 2	21.463
	CNS0095612	Silvery flower (tetraploid) 3	62.019
	CNS0095613	Golden flower (tetraploid) 1	23.354
	CNS0095614	Golden flower (tetraploid) 2	24.751
	CNS0095615	Golden flower (tetraploid) 3	22.722
CRA001975	CRR073297	Stem 1	31.276
	CRR073298	Stem 2	30.868
	CRR073299	Stem 3	38.468
	CRR073300	Leaf 1	31.978
	CRR073301	Leaf 2	28.962
	CRR073302	Leaf 3	39.589
	CRR073303	Juvenile bud 1	35.961
	CRR073304	Juvenile bud 2	56.204
	CRR073305	Juvenile bud 3	40.939
	CRR073306	Third green 1	116.430
	CRR073307	Third green 2	97.933
	CRR073308	Third green 3	90.908
	CRR073309	Second white 1	126.767
	CRR073310	Second white 2	91.557
	CRR073311	Second white 3	88.190
	CRR073312	Silver flowering 1	115.182
	CRR073313	Silver flowering 2	117.592
	CRR073314	Silver flowering 3	103.911
	CRR073315	Gold flowering 1	52.649
	CRR073316	Gold flowering 2	66.587
	CRR073317	Gold flowering 3	55.500
	CRR073318	Tawny withering 1	43.307
	CRR073319	Tawny withering 2	22.409
	CRR073320	Tawny withering 3	46.240