Gene detail

Detail information of GWHGAAZE018122

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003631071.1	0	Guanine nucleotide-binding protein subunit beta-like protein [Medicago truncatula]
Swissprot	tr\|O24076\|GBLP_MEDSA	0	Guanine nucleotide-binding protein subunit beta-like protein
trEMBL	tr\|G7LD98\|G7LD98_MEDTR	0	Guanine nucleotide-binding protein beta subunit-like protein {ECO:0000313\|EMBL:AET05547.1}
TAIR10	AT1G18080.1	7E-153	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	15437691	15440002	+
GWHAAZE00000005	mRNA	15437691	15440002	+
GWHAAZE00000005	exon	15437691	15438480	+
GWHAAZE00000005	exon	15439401	15439498	+
GWHAAZE00000005	exon	15439901	15440002	+
GWHAAZE00000005	CDS	15437691	15438480	+
GWHAAZE00000005	CDS	15439401	15439498	+
GWHAAZE00000005	CDS	15439901	15440002	+

Transcript Sequence
>GWHTAAZE018144 ATGGCGGAATCTCTAGTCCTTCGTGGAACAATGAGAGCCCACACCGATTGGGTAACCGCAATCGCAACACCAATCGACAACTCCGACATGATCGTCACCTCCTCCCGCGACAAATCCCTAATTCTCTGGCAACTCACAAAGGAAGACAAAACCTACGGCGTCCCCCGCCGCCGTTTAACCGGCCACTCTCACTTCGTTCAGGATGTCGTCCTTTCCTCTGACGGCCAGTTCGCCCTTTCCGGCAGCTGGGACGGCGAGCTCCGCCTCTGGGACCTCGCCACCGGTGTCACCGCCCGCCGCTTCGTGGGCCACACCAAGGACGTCCTCTCCGTCGCGTTCTCCATCGACAACCGTCAGATCGTGTCCGCTTCTCGAGACCGTTCGATCAAGCTATGGAACACTCTCGGAGAGTGTAAATACACAATCCAAGACGGTGAGGCCCATTCTGATTGGGTCAGTTGTGTGAGGTTCAGCCCAAATACTCTCCAGCCTACGATTGTTTCGGCCTCGTGGGACCGGACTGTGAAAATCTGGAACTTGACTAATTGTAAGTTGAGGTCTACGCTGGCAGGTCACGGGGGTTACGTGGAGACTGTCGCCGTTTCGCCGGACGGTTCGTTGTGTGCGAGTGGAGGGAAAGATGGGGTGATTTTGCTGTGGGATTTGGCTGAGGGAAAGAGGCTGTATTCGTTGGATGCGGGGTCGATTATTCATGCTTTGTGCTTTAGTCCTAATAGGTATTGGCTTTGTGCTGCTACGGAGTCGAGCATCAAGATCTGGGATTTGGAGAACCTATTGTTTGCTTCAAGGAGATCTTTGCCTCTCCTTGGCATCCTGATATTTGCACCACAGCTGTGCTTCTCTACCTCAGCCCTTTCCACATCTCTGGTGATTTACTGCACAAGCTTAAGTTGGAGTGCTGATGGAAGCACATTGTTCAGCGGGTATACAGATGGCGTTGTCAGAGTTTGGGGTATTGGTCGTTACTAG

Network for GWHGAAZE018122

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	9	43	0.026
PF00400.33	WD40	55	91	3.90E-07
PF00400.33	WD40	99	133	1.60E-06
PF00400.33	WD40	146	179	4.50E-06
PF00400.33	WD40	186	221	5.40E-07
PF00400.33	WD40	235	261	0.00081
PF00400.33	WD40	301	324	0.0013

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	352.752
	SRR3591706	second leaf	114.043
	SRR3591707	mature leaf	52.149
	SRR3591708	Shoot apex	332.780
	SRR3591709	Stem	151.608
	SRR3591710	White floral bud	149.044
	SRR3591711	White flower	157.234
	SRR3591712	Green floral bud	288.411
	SRR3591713	Yellow flower	104.922
SRP173429	SRR8316895	Juvenile bud stage	181.744
	SRR8316896	Juvenile bud stage	239.001
	SRR8316897	Juvenile bud stage	116.161
	SRR8316894	Third green stage	99.766
	SRR8316900	Third green stage	403.298
	SRR8316901	Third green stage	355.082
	SRR8316898	Complete white stage	92.406
	SRR8316899	Complete white stage	369.418
	SRR8316903	Complete white stage	117.790
	SRR8316902	Silver flowering stage	70.784
	SRR8316904	Silver flowering stage	71.405
	SRR8316905	Silver flowering stage	40.090
	SRR8316906	Gold flowering stage	110.502
	SRR8316907	Gold flowering stage	124.094
	SRR8316908	Gold flowering stage	139.366
SRP132670	SRR6706286	Control	450.537
	SRR6706287	Light intensity 50%	457.997
	SRR6706288	Light intensity 20%	477.683
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	258.303
	CNS0095593	Slightly white alabastrum(diploid) 2	295.055
	CNS0095594	Slightly white alabastrum(diploid) 3	218.822
	CNS0095595	Whole white alabastrum(diploid) 2	230.287
	CNS0095596	Whole white alabastrum(diploid) 3	272.731
	CNS0095597	Whole white alabastrum(diploid) 4	190.903
	CNS0095598	Silvery flower (diploied) 1	143.993
	CNS0095599	Silvery flower (diploied) 2	131.422
	CNS0095600	Silvery flower (diploied) 3	177.819
	CNS0095601	Golden flower (diploid) 1	122.253
	CNS0095602	Golden flower (diploid) 2	148.566
	CNS0095603	Golden flower (diploid) 3	143.164
	CNS0095604	Slightly white alabastrum(tetraploid) 1	235.212
	CNS0095605	Slightly white alabastrum(tetraploid) 2	225.651
	CNS0095606	Slightly white alabastrum(tetraploid) 3	376.900
	CNS0095607	Whole white alabastrum(tetraploid) 1	129.704
	CNS0095608	Whole white alabastrum(tetraploid) 2	116.309
	CNS0095609	Whole white alabastrum(tetraploid) 3	330.454
	CNS0095610	Silvery flower (tetraploid) 1	138.336
	CNS0095611	Silvery flower (tetraploid) 2	131.075
	CNS0095612	Silvery flower (tetraploid) 3	79.928
	CNS0095613	Golden flower (tetraploid) 1	46.543
	CNS0095614	Golden flower (tetraploid) 2	95.938
	CNS0095615	Golden flower (tetraploid) 3	56.057
CRA001975	CRR073297	Stem 1	380.763
	CRR073298	Stem 2	386.195
	CRR073299	Stem 3	481.606
	CRR073300	Leaf 1	475.099
	CRR073301	Leaf 2	497.440
	CRR073302	Leaf 3	577.319
	CRR073303	Juvenile bud 1	592.294
	CRR073304	Juvenile bud 2	432.746
	CRR073305	Juvenile bud 3	548.030
	CRR073306	Third green 1	88.522
	CRR073307	Third green 2	94.525
	CRR073308	Third green 3	92.769
	CRR073309	Second white 1	116.734
	CRR073310	Second white 2	87.456
	CRR073311	Second white 3	62.562
	CRR073312	Silver flowering 1	86.878
	CRR073313	Silver flowering 2	129.438
	CRR073314	Silver flowering 3	99.302
	CRR073315	Gold flowering 1	143.723
	CRR073316	Gold flowering 2	202.296
	CRR073317	Gold flowering 3	170.345
	CRR073318	Tawny withering 1	412.190
	CRR073319	Tawny withering 2	283.417
	CRR073320	Tawny withering 3	422.446