Gene detail

Detail information of GWHGAAZE018123

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002278062.2	0	PREDICTED: snRNA-activating protein complex subunit 4 isoform X2 [Vitis vinifera]
Swissprot	tr\|Q9S7G7\|MB3R1_ARATH	3E-26	Myb-related protein 3R-1
trEMBL	tr\|A0A022RKE9\|A0A022RKE9_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU40228.1} (Fragment)
TAIR10	AT3G18100.1	1E-164	myb domain protein 4r1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	15443486	15451615	+
GWHAAZE00000005	mRNA	15443486	15451615	+
GWHAAZE00000005	exon	15443486	15443750	+
GWHAAZE00000005	exon	15444179	15444702	+
GWHAAZE00000005	exon	15444919	15445106	+
GWHAAZE00000005	exon	15445801	15445971	+
GWHAAZE00000005	exon	15446214	15446528	+
GWHAAZE00000005	exon	15446691	15446849	+
GWHAAZE00000005	exon	15446928	15447077	+
GWHAAZE00000005	exon	15447195	15447425	+
GWHAAZE00000005	exon	15447692	15447943	+
GWHAAZE00000005	exon	15450688	15451615	+
GWHAAZE00000005	CDS	15443486	15443750	+
GWHAAZE00000005	CDS	15444179	15444702	+
GWHAAZE00000005	CDS	15444919	15445106	+
GWHAAZE00000005	CDS	15445801	15445971	+
GWHAAZE00000005	CDS	15446214	15446528	+
GWHAAZE00000005	CDS	15446691	15446849	+
GWHAAZE00000005	CDS	15446928	15447077	+
GWHAAZE00000005	CDS	15447195	15447425	+
GWHAAZE00000005	CDS	15447692	15447943	+
GWHAAZE00000005	CDS	15450688	15451615	+

Transcript Sequence
>GWHTAAZE018145 ATGGAAGCCCTACGAAGGGCTTGCACTCTCACTGGAACAAACCCTAACAACCTCCAATCCTCATCCTCTGCCCCAAATCCCGTTGTTTCCCCAGCCTATGATCACGACTCCGAGGAGGATGATTTGGAGTTGGTACGCAGTATACAGCGGCGCTTCTCTATTCCCACCACCGACGATGATGAGCAGCCTCTTAATTTAAAGCCATTGTGTTCGATTCCGCCGCCTGGTTCTGATGGGGAATGGGAGGACGATTTCGAAACTCTACGAAGTCAAAAGAACAACACAGAGGATGATTTACATACCCCTGAGCAGGTTGGTGCTACTAATATAGCTTCGGAAAAGGAAAGTTCCAATACTTTATTTGTAGAGAGAACTAATATTGGCGAAGGATTTCCAGATTGTGTAGATGCGAGCATTGCCACCACCCATGAATCGGAATCAATCATTGAAAGTGGTCCCGAGACACACCCGTCTGGTTTAATTGAATGGCATGGGTCGGGTACTGAAAATGTAGCCGTATCATCACCCATCAGAGATTCTGGCTTCCCAAAATATGCACAGGAATTACTTGATGCCATTAAAAAGAACAGATCCTGTCAGAAATTTCTTCGAAATAAGCTGATGCAGATTGAATCCAGAATCGAGGAGAACAAGAAACTGAGGGAGCGTGTTAAAATTTTGAAAGACTTTCAAGTGACTTGCCGGAAAAGAATGGGGAGAGCATTGTCTCAGAAGAGGGATGCTCGTGTGCAGTTAATTTACACATCTAAGCTAAGGTCTAATGCAAAGGTCAATGAGAAAAAGGTCCATGCTATGTGTTATGGCCCTGCTGAAAATGCTCATGTTGCTAATTATAGAATGGTATTAACAAAATTTCCACTCTCATTGAGTCGGGAGAAGTGGTCAAAAGAAGAGAGGGAAAACCTTGCAAAGGGAATAAAACAACAGTTTCAAGCAAAATTACTTAACCGCTTCAGTAGTGCAGACGAATATCCTGGAGATTCGACCGATATTGTTAGCTTTATGGGATCAATCAAGGATCTCGAGTTAACCCCTGAGAATATTAGGTCATTTCTGCCCCAGGTTAACTGGGAGCAATTGGCTTCGATGTATGTCACAGGCCGGTCTGGCGCAGAATGTGAAGCAAGGTGGTTGAACTGTGAAGATCCCTTAATTAATCACAGTCCATGGACAACAATGGAAGATAAAAATCTATTGCATATTGTCCAACAAAGGGGGATCTGTAACTGGATTGACATTGCAGTGTCATTGGGAACAAACAGGACCCCATTTCAGTGTTTGGCACGCTACCAAAGGAGTCTTAATGCCTCCATAATGAAAAGGGAGTGGACTGATGATGATGATGATAAACTTCGTTCAGCTGTAGAAGAGGTGGGAGAGCGTAATTGGCAGCTTGTTGCTTCTAAATTGGAAGGACGGACAGGTACCCAATGCTCTAATAGGTGGAAGAAAACCCTCCATCCAACACGGCAAAGGGTAGGGAAATGGACTTCAGATGAAGATAAACGCTTGAAAGTAGCAGTGATGCTTTTTGGTGCCAAAAGCTGGCAAAAAATAGCTGAGTACGTACCTGGACGGACTCAAGTGCAGTGTAGAGAAAGATGGGTCAATTGCCTAGATCCTTCTTTAAACATGGGTGAATGGACTGAAGATGAAGATTTGAAGTTGAAAGCTGCAATTGCAGAGCATGGATATTGCTGGTCCAAGGTTGCTGCATGTGTTCCTCCTCGTACTGACAGTCAGTGCCGTAGGAGATGGAAGGTGTTGCTTCCACATGAAGTGCCTTTACTCCAAGCAGCTAGAAAGGTGCAGAAGGCTGCTTTAATATCCAACTTTGTAGACCGGGAATCAGAAAGGCCTTCCCTTGGACCTAAGGATTTTATTACATTACCGATGCTAGATTCAGCTCCTGCATCTGAAAATGTAAAACCTTGTGAAAAACAGAAACAGAAATCAAGGTATAATATTCCAACACTTGCAATATGTATTCCACAAACCAGGTCCAAGAGTTGTATAAAGGAAGCTCATAATTGCTCCAATGGAGTTTTGAGGTTAACAGATGGTCGCGAGGCTGACAACTTTGGTGGTAATGTTGACAAGCCGAGGAAGAAACGAGTGAAAAAGTCAACATTAAAAAACTCAGAACCACCTGGTAGGGAAAAGGTTGAAGCATCTGGAGGGAATGATGCTTCGAAGAAGAAACGCAGTCCCAGGAGAGGAAAAAGAAAATCAGGATGCGAGCCGGAATCTAAGAGAAATGCCACAGCTTCTGGCAAGTCAAAGAAGAAGAGAGCTGGGAAAAAACCATCTCTGAATGGAAATGAAGGTTCAGATAAAACAAACTTAGAGGATCAGGGATTCCACATGGACGACACCACAGAGAATTCGAATGCTTGTAAATCACTTCCAAGAAACAACAGATGCACTCTACCACTTGTGGACGTCCAGGTGAATGCCAATTTCAATGAAGCCAAGGTCTTTAATGGAAATTATACCACGTTGCCAAAGAAGAGGAAAATTAAGGGGCGTTCAAAGAAGTATAGAGATAGTGGACCAACACTAATTGATGAAGATATTGGGCCATTTGATGTAATTGATGCTGTGAATACAAAACGGACTCTTAATTCGAATGATGCTGCAAATAAGGAACAGGCTCTTATTCCATGTTCTCCTGATCCCTCGGCTATCAGCCAGAGTCTTCCACCAGTCAATGAAAGGTTGGAGCTAGGGACTGAAGATGGTGATGGTGTTGAGGCATTAGGTGGGGATAATAACACTGGAGAGGGACCCATAAGATGCTCAACACCTGATATTTTAGATAGTTTGAACCCTAGAGCTTCCATCATTTGCCGACAGAAGGGGAAGCAAAGGCGGCCAAGGAAGAGGGAAAAAAACAGTTCCTATCAAATTTCGGAAAAAGAAGGTGGGGATGACAATACCCTTGCATCCTTCCTTCAGCAATCGAAGAAACACCGTAAAGCGGCTGCATTTTGTTCTGAAAAGATACCCAAGCCCAAAAGGACAAGGGCAGGAAGAGATAAAACTAGTAGTTATGCTCAGATGATTGAAGAAGAGGGAGAAGATGGGGATGATATGACACTATCTTCGTTTTGCAGCAAATTGAAGAAAAGGAAGCGTGAAATAGCGAAAAATGGCAATTGA

Network for GWHGAAZE018123

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	395	439	1.50E-07
PF00249.32	Myb_DNA-binding	447	492	1.30E-11
PF00249.32	Myb_DNA-binding	501	545	1.10E-15
PF00249.32	Myb_DNA-binding	553	597	3.60E-14

Protein Sequence

>GWHPAAZE018134
MEALRRACTLTGTNPNNLQSSSSAPNPVVSPAYDHDSEEDDLELVRSIQRRFSIPTTDDDEQPLNLKPLCSIPPPGSDGEWEDDFETLRSQKNNTEDDLHTPEQVGATNIASEKESSNTLFVERTNIGEGFPDCVDASIATTHESESIIESGPETHPSGLIEWHGSGTENVAVSSPIRDSGFPKYAQELLDAIKKNRSCQKFLRNKLMQIESRIEENKKLRERVKILKDFQVTCRKRMGRALSQKRDARVQLIYTSKLRSNAKVNEKKVHAMCYGPAENAHVANYRMVLTKFPLSLSREKWSKEERENLAKGIKQQFQAKLLNRFSSADEYPGDSTDIVSFMGSIKDLELTPENIRSFLPQVNWEQLASMYVTGRSGAECEARWLNCEDPLINHSPWTTMEDKNLLHIVQQRGICNWIDIAVSLGTNRTPFQCLARYQRSLNASIMKREWTDDDDDKLRSAVEEVGERNWQLVASKLEGRTGTQCSNRWKKTLHPTRQRVGKWTSDEDKRLKVAVMLFGAKSWQKIAEYVPGRTQVQCRERWVNCLDPSLNMGEWTEDEDLKLKAAIAEHGYCWSKVAACVPPRTDSQCRRRWKVLLPHEVPLLQAARKVQKAALISNFVDRESERPSLGPKDFITLPMLDSAPASENVKPCEKQKQKSRYNIPTLAICIPQTRSKSCIKEAHNCSNGVLRLTDGREADNFGGNVDKPRKKRVKKSTLKNSEPPGREKVEASGGNDASKKKRSPRRGKRKSGCEPESKRNATASGKSKKKRAGKKPSLNGNEGSDKTNLEDQGFHMDDTTENSNACKSLPRNNRCTLPLVDVQVNANFNEAKVFNGNYTTLPKKRKIKGRSKKYRDSGPTLIDEDIGPFDVIDAVNTKRTLNSNDAANKEQALIPCSPDPSAISQSLPPVNERLELGTEDGDGVEALGGDNNTGEGPIRCSTPDILDSLNPRASIICRQKGKQRRPRKREKNSSYQISEKEGGDDNTLASFLQQSKKHRKAAAFCSEKIPKPKRTRAGRDKTSSYAQMIEEEGEDGDDMTLSSFCSKLKKRKREIAKNGN

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.721
	SRR3591706	second leaf	6.179
	SRR3591707	mature leaf	5.131
	SRR3591708	Shoot apex	8.368
	SRR3591709	Stem	5.164
	SRR3591710	White floral bud	5.942
	SRR3591711	White flower	7.358
	SRR3591712	Green floral bud	6.659
	SRR3591713	Yellow flower	5.934
SRP173429	SRR8316895	Juvenile bud stage	4.136
	SRR8316896	Juvenile bud stage	5.899
	SRR8316897	Juvenile bud stage	2.501
	SRR8316894	Third green stage	2.808
	SRR8316900	Third green stage	5.341
	SRR8316901	Third green stage	5.160
	SRR8316898	Complete white stage	2.310
	SRR8316899	Complete white stage	4.836
	SRR8316903	Complete white stage	4.779
	SRR8316902	Silver flowering stage	2.067
	SRR8316904	Silver flowering stage	3.999
	SRR8316905	Silver flowering stage	1.246
	SRR8316906	Gold flowering stage	4.260
	SRR8316907	Gold flowering stage	5.782
	SRR8316908	Gold flowering stage	5.415
SRP132670	SRR6706286	Control	5.084
	SRR6706287	Light intensity 50%	5.428
	SRR6706288	Light intensity 20%	5.149
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.854
	CNS0095593	Slightly white alabastrum(diploid) 2	4.384
	CNS0095594	Slightly white alabastrum(diploid) 3	5.685
	CNS0095595	Whole white alabastrum(diploid) 2	4.260
	CNS0095596	Whole white alabastrum(diploid) 3	4.764
	CNS0095597	Whole white alabastrum(diploid) 4	4.293
	CNS0095598	Silvery flower (diploied) 1	5.564
	CNS0095599	Silvery flower (diploied) 2	3.064
	CNS0095600	Silvery flower (diploied) 3	4.971
	CNS0095601	Golden flower (diploid) 1	3.280
	CNS0095602	Golden flower (diploid) 2	3.940
	CNS0095603	Golden flower (diploid) 3	4.067
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.497
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.287
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.276
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.440
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.078
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.625
	CNS0095610	Silvery flower (tetraploid) 1	4.960
	CNS0095611	Silvery flower (tetraploid) 2	4.724
	CNS0095612	Silvery flower (tetraploid) 3	4.226
	CNS0095613	Golden flower (tetraploid) 1	2.766
	CNS0095614	Golden flower (tetraploid) 2	4.282
	CNS0095615	Golden flower (tetraploid) 3	3.949
CRA001975	CRR073297	Stem 1	8.082
	CRR073298	Stem 2	6.063
	CRR073299	Stem 3	5.430
	CRR073300	Leaf 1	5.734
	CRR073301	Leaf 2	5.453
	CRR073302	Leaf 3	3.478
	CRR073303	Juvenile bud 1	3.194
	CRR073304	Juvenile bud 2	2.044
	CRR073305	Juvenile bud 3	4.912
	CRR073306	Third green 1	1.648
	CRR073307	Third green 2	1.178
	CRR073308	Third green 3	1.817
	CRR073309	Second white 1	0.787
	CRR073310	Second white 2	1.654
	CRR073311	Second white 3	1.265
	CRR073312	Silver flowering 1	1.423
	CRR073313	Silver flowering 2	1.925
	CRR073314	Silver flowering 3	1.212
	CRR073315	Gold flowering 1	4.566
	CRR073316	Gold flowering 2	8.028
	CRR073317	Gold flowering 3	1.968
	CRR073318	Tawny withering 1	5.982
	CRR073319	Tawny withering 2	4.779
	CRR073320	Tawny withering 3	4.382