Gene detail

Detail information of GWHGAAZE018124

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002281357.1	2.7076E-168	PREDICTED: alpha-dioxygenase 2 [Vitis vinifera]
Swissprot	tr\|Q9C9U3\|DOX2_ARATH	5E-150	Alpha-dioxygenase 2 (Precursor)
trEMBL	tr\|D7SJ80\|D7SJ80_VITVI	1E-168	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI15541.3}
TAIR10	AT1G73680.1	2E-124	alpha dioxygenase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	15460095	15463202	+
GWHAAZE00000005	mRNA	15460095	15463202	+
GWHAAZE00000005	exon	15460095	15460253	+
GWHAAZE00000005	exon	15460428	15460580	+
GWHAAZE00000005	exon	15461116	15461252	+
GWHAAZE00000005	exon	15461720	15461933	+
GWHAAZE00000005	exon	15462094	15462140	+
GWHAAZE00000005	exon	15462284	15462353	+
GWHAAZE00000005	exon	15462634	15462826	+
GWHAAZE00000005	exon	15462997	15463202	+
GWHAAZE00000005	CDS	15460095	15460253	+
GWHAAZE00000005	CDS	15460428	15460580	+
GWHAAZE00000005	CDS	15461116	15461252	+
GWHAAZE00000005	CDS	15461720	15461933	+
GWHAAZE00000005	CDS	15462094	15462140	+
GWHAAZE00000005	CDS	15462284	15462353	+
GWHAAZE00000005	CDS	15462634	15462826	+
GWHAAZE00000005	CDS	15462997	15463202	+

Transcript Sequence
>GWHTAAZE018146 ATGTTGGACGCATCAACGGCCAGAAATACGACACTGAAGATTTCTCATATCAGACAGCTGATCGATGGCAAGTGCAATCATCCAACTGATGACCTAGTAGGCAGCCAAGGGACATTTTTGGCCGCAAAATGCCTCTATCCACTTCGCGTTATTGGGTATTTGATGGAGCCTGATCCAACAGTGGTAGCTGCAAAGCTGTTGGACAGGAAGAAATATGTGGATAGTGGGAAGCAACTAAACATAATAGCATGCTCATGGATACAATTCATGATCCACGACTGGATTGACCATATGGAAGACACTGATCAACAGGTGGAAATAAAAGCTGCAGTTGAAGTTGGAGAAGGGTGTCCACTGAAATCATTCAAGTTCTTTAGGTGCAAGCAAGTCCCCACAGGATCTCCTCACCTCAACACCACTGGATTCTTGAATACCAGAACTCCATGGTGGGATGGAAGTGTGATTTATGGGAATAACGAAGAGGGGATGAATAAGGTAAGAACATTTAAAGAAGGAAAGTTGAAGATCTTTGAAGATGGCCTTCTTCAACACGACGAGAAAGGAATTCCCATCTCAGGCGAAGTCCGCAACTGTTGGGCCTGCTTCTGCCTCTTGCAAGCCTTATTTGTCAAAGAGCACAGTTCTGTTTGTGATTTGCTCAAAAAACATTACCCGGATTTTGATGATGAGAAGCTGTACCAACATGCGCGGTATGGGTTTCTTGGGAAGAAACTCAAGGACTTGTTTGGACATATTTGTGGACCAGTTTTAAGTGGATTAGGTGCCTATGAGGGAAATGATTGGAAAGAAGGGGAGAGAAGATTATCGATAATTGGAATGGAGAAGACAATGGGCCATCAATCATGTGGAGCCGTGGCTTTATGGAATTACCCTTCATGGATGAGAAACCTTGTTCCTCGTGATATCGATGGTGAAGATAGAGCTGATCCAGTTGGCATGGCCGCTTTGGCAATTTATAGAGATAGAGAGAGGGAAGTTATACGGTACAATGCATTTAGGAGGAACTTGCTAATGATCCCAATTAGCAAGTGGGAAGATTTAACTGATGACGAAGAAGTTGTGGAATCACTCCGTGAAGTTTATGGAAACGATTTTGAGAAGCTAGACTTGCAAGTTGGCTTACAAGCGGAGAAAAAGATCAAAGGCTTTTGCCATTAG

Network for GWHGAAZE018124

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03098.16	An_peroxidase	21	237	4.40E-39
PF03098.16	An_peroxidase	282	390	2.70E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10529	DOX	alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.191
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.858
	SRR3591708	Shoot apex	0.188
	SRR3591709	Stem	0.399
	SRR3591710	White floral bud	0.254
	SRR3591711	White flower	0.402
	SRR3591712	Green floral bud	0.192
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.895
	SRR8316896	Juvenile bud stage	1.044
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.381
	SRR8316900	Third green stage	1.004
	SRR8316901	Third green stage	0.650
	SRR8316898	Complete white stage	0.183
	SRR8316899	Complete white stage	1.178
	SRR8316903	Complete white stage	0.632
	SRR8316902	Silver flowering stage	0.378
	SRR8316904	Silver flowering stage	0.489
	SRR8316905	Silver flowering stage	0.230
	SRR8316906	Gold flowering stage	0.382
	SRR8316907	Gold flowering stage	0.392
	SRR8316908	Gold flowering stage	0.170
SRP132670	SRR6706286	Control	0.991
	SRR6706287	Light intensity 50%	1.186
	SRR6706288	Light intensity 20%	0.956
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.855
	CNS0095593	Slightly white alabastrum(diploid) 2	0.722
	CNS0095594	Slightly white alabastrum(diploid) 3	0.456
	CNS0095595	Whole white alabastrum(diploid) 2	0.662
	CNS0095596	Whole white alabastrum(diploid) 3	0.655
	CNS0095597	Whole white alabastrum(diploid) 4	0.738
	CNS0095598	Silvery flower (diploied) 1	2.600
	CNS0095599	Silvery flower (diploied) 2	1.492
	CNS0095600	Silvery flower (diploied) 3	0.574
	CNS0095601	Golden flower (diploid) 1	2.443
	CNS0095602	Golden flower (diploid) 2	0.561
	CNS0095603	Golden flower (diploid) 3	0.582
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.579
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.727
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.308
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.101
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.310
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.171
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.038
CRA001975	CRR073297	Stem 1	0.637
	CRR073298	Stem 2	0.766
	CRR073299	Stem 3	0.112
	CRR073300	Leaf 1	0.987
	CRR073301	Leaf 2	0.700
	CRR073302	Leaf 3	0.034
	CRR073303	Juvenile bud 1	0.473
	CRR073304	Juvenile bud 2	0.059
	CRR073305	Juvenile bud 3	0.375
	CRR073306	Third green 1	0.126
	CRR073307	Third green 2	0.106
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.139
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.036
	CRR073315	Gold flowering 1	0.804
	CRR073316	Gold flowering 2	2.824
	CRR073317	Gold flowering 3	0.210
	CRR073318	Tawny withering 1	0.313
	CRR073319	Tawny withering 2	0.747
	CRR073320	Tawny withering 3	0.643