Detail information of GWHGAAZE018126


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010663661.10PREDICTED: exonuclease 1 isoform X1 [Vitis vinifera]
Swissprottr|Q8L6Z7|EXO1_ARATH7E-80Exonuclease 1
trEMBLtr|V4TWE1|V4TWE1_9ROSI0Uncharacterized protein {ECO:0000313|EMBL:ESR64903.1}
TAIR10AT1G18090.15E-1365'-3' exonuclease family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1548431115487440-
GWHAAZE00000005mRNA1548431115487440-
GWHAAZE00000005exon1548431115484786-
GWHAAZE00000005exon1548506515485102-
GWHAAZE00000005exon1548523715485329-
GWHAAZE00000005exon1548543115485528-
GWHAAZE00000005exon1548564315485698-
GWHAAZE00000005exon1548581415485928-
GWHAAZE00000005exon1548605015486199-
GWHAAZE00000005exon1548641515486459-
GWHAAZE00000005exon1548676115486839-
GWHAAZE00000005exon1548691415487109-
GWHAAZE00000005exon1548721115487247-
GWHAAZE00000005exon1548736315487440-
GWHAAZE00000005CDS1548736315487440-
GWHAAZE00000005CDS1548721115487247-
GWHAAZE00000005CDS1548691415487109-
GWHAAZE00000005CDS1548676115486839-
GWHAAZE00000005CDS1548641515486459-
GWHAAZE00000005CDS1548605015486199-
GWHAAZE00000005CDS1548581415485928-
GWHAAZE00000005CDS1548564315485698-
GWHAAZE00000005CDS1548543115485528-
GWHAAZE00000005CDS1548523715485329-
GWHAAZE00000005CDS1548506515485102-
GWHAAZE00000005CDS1548431115484786-
Transcript Sequence

Network for GWHGAAZE018126

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00752.18XPG_N1979.10E-20
PF00867.19XPG_I1492061.60E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10746EXO1 Mismatch repair map03430

Gene Ontology

GO term OntologyName
GO:0006281biological_processDNA repair
GO:0004518molecular_functionnuclease activity
GO:0005515molecular_functionprotein binding
GO:0016788molecular_functionhydrolase activity, acting on ester bonds

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.191
SRR3591706second leaf0.546
SRR3591707mature leaf0.000
SRR3591708Shoot apex5.854
SRR3591709Stem0.738
SRR3591710White floral bud0.340
SRR3591711White flower0.100
SRR3591712Green floral bud0.861
SRR3591713Yellow flower0.171
SRP173429 SRR8316895Juvenile bud stage 1.515
SRR8316896Juvenile bud stage 3.033
SRR8316897Juvenile bud stage 1.189
SRR8316894Third green stage 0.573
SRR8316900Third green stage 1.488
SRR8316901Third green stage 1.953
SRR8316898Complete white stage 0.083
SRR8316899Complete white stage 0.210
SRR8316903Complete white stage 0.001
SRR8316902Silver flowering stage0.097
SRR8316904Silver flowering stage0.283
SRR8316905Silver flowering stage0.269
SRR8316906Gold flowering stage 0.201
SRR8316907Gold flowering stage 0.137
SRR8316908Gold flowering stage 0.280
SRP132670SRR6706286Control0.517
SRR6706287Light intensity 50%0.567
SRR6706288Light intensity 20%0.739
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.371
CNS0095593Slightly white alabastrum(diploid) 22.530
CNS0095594Slightly white alabastrum(diploid) 33.442
CNS0095595Whole white alabastrum(diploid) 22.311
CNS0095596Whole white alabastrum(diploid) 32.347
CNS0095597Whole white alabastrum(diploid) 41.613
CNS0095598Silvery flower (diploied) 10.370
CNS0095599Silvery flower (diploied) 20.315
CNS0095600Silvery flower (diploied) 30.362
CNS0095601Golden flower (diploid) 10.501
CNS0095602Golden flower (diploid) 20.146
CNS0095603Golden flower (diploid) 30.288
CNS0095604Slightly white alabastrum(tetraploid) 12.260
CNS0095605Slightly white alabastrum(tetraploid) 22.847
CNS0095606Slightly white alabastrum(tetraploid) 30.810
CNS0095607Whole white alabastrum(tetraploid) 10.936
CNS0095608Whole white alabastrum(tetraploid) 22.227
CNS0095609Whole white alabastrum(tetraploid) 31.014
CNS0095610Silvery flower (tetraploid) 10.119
CNS0095611Silvery flower (tetraploid) 20.448
CNS0095612Silvery flower (tetraploid) 30.160
CNS0095613Golden flower (tetraploid) 10.027
CNS0095614Golden flower (tetraploid) 20.130
CNS0095615Golden flower (tetraploid) 30.015
CRA001975CRR073297Stem 11.190
CRR073298Stem 21.401
CRR073299Stem 30.446
CRR073300Leaf 10.925
CRR073301Leaf 20.642
CRR073302Leaf 30.317
CRR073303Juvenile bud 10.525
CRR073304Juvenile bud 20.090
CRR073305Juvenile bud 30.000
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.047
CRR073309Second white 10.122
CRR073310Second white 20.501
CRR073311Second white 30.068
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.047
CRR073314Silver flowering 30.067
CRR073315Gold flowering 10.380
CRR073316Gold flowering 20.059
CRR073317Gold flowering 30.065
CRR073318Tawny withering 11.259
CRR073319Tawny withering 20.792
CRR073320Tawny withering 32.108