Gene detail

Detail information of GWHGAAZE018159

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008240147.1	9.4909E-168	PREDICTED: prostaglandin E synthase 2-like [Prunus mume]
trEMBL	tr\|D7SJB8\|D7SJB8_VITVI	3E-167	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI15579.3}
TAIR10	AT5G42150.1	5E-109	Glutathione S-transferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	15844214	15853008	-
GWHAAZE00000005	mRNA	15844214	15853008	-
GWHAAZE00000005	exon	15852657	15853008	-
GWHAAZE00000005	exon	15849802	15849978	-
GWHAAZE00000005	exon	15849613	15849703	-
GWHAAZE00000005	exon	15846211	15846343	-
GWHAAZE00000005	exon	15845141	15845330	-
GWHAAZE00000005	exon	15844214	15844374	-
GWHAAZE00000005	CDS	15852657	15853008	-
GWHAAZE00000005	CDS	15849802	15849978	-
GWHAAZE00000005	CDS	15849613	15849703	-
GWHAAZE00000005	CDS	15846211	15846343	-
GWHAAZE00000005	CDS	15845141	15845330	-
GWHAAZE00000005	CDS	15844214	15844374	-

Transcript Sequence
>GWHTAAZE018181 ATGAGAAGAGCTTCTTCAACTCTCGCCTCCTCCGCCCTCTCCCGCTCCCTCCTCCCCGGCGGAGCCGACGGTTGTGCCGCCGTGATCCAGCACAGGTTCGTACAGGCCGCTTTGTACGGAAGCACCACCTCTTCCACTAGTCGGCGGTGGTTTTCGACCGCCATCGCTTCAATATCCGGTAGGTCGGCGAAAACCGGGAGTCTAGGAATTGCTGGAGCTTTGGTGTTCGTTGCTGGATCTGCATCGCTCTTACAAGAGGCGAATGCGAAAGAGATTCCCTCCGGGGAGCTTGTTCCCAAGGATGTTGTGCTTTATCAGTACGAAGCTTGCCCTTTCTGTAATAAGGTTAAAGCCTTCCTGGACTACTATGGTTTACCATACAAGGTTGTGGAGGTAAATCCAATTAGTAAAAAGGAAATCAAATGGTCTGATTATAAGAAGGTTCCTATACTGGTGGTGGATGGCGAACAGCTGGTTGATTCATCAGGTACTTGCTATTTTTCTTCCCTTAATTGGATTTATGATTATACAATTATTGATAAGTTGGGTGAAAAGGTTCGTCCTCCTCAGAAATCCACTAAAGCAGACCTAGCAGAAGATGAAGAGAAGAAGTGGCGCCAGTGGGTCGATAATCATTTGGTGCATGTATTATCACCAAATATCTACCGAAATACGTCGGAGGCTTTGGAGTCCTTTGACTATATCACAAGCAATGGTAAGATATGTGTGGATCTTAACATTGAAATATATCATTCTTCTATTCGTGCACTTGTAGGTAATTTCAGCTTCACCGAGAAATACACAGTTAAATATGCTGGGGCAGCGGCTATGTATTTTGTGTCAAAGAATCTGAAGAAGAAATATAATATCACTGATGAACGCGCTGCCTTGTATGAAGCTGCAGAAACGTGGGTGGATGCACTTAATGGCCGGGAGTTTCTTGGGGGCTCCAAGCCTAATTTAGCCGACCTTGCCGTGTTTGGGGTGTTAAGACCTATTCGTTATCTAAGGTCTGGTAAAGATATGGTGGAACACACAAGAATCGGTGAATGGTACTCAAGAATGGAGAATGCTGTGGGAGAGTCTTCAAGGATCAAGGCCTGA

Network for GWHGAAZE018159

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00462.25	Glutaredoxin	102	156	1.20E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05309	PTGES2	Metabolic pathways	map01100
K05309	PTGES2	Arachidonic acid metabolism	map00590

Gene Ontology

GO term	Ontology	Name
GO:0045454	biological_process	cell redox homeostasis
GO:0009055	molecular_function	electron transfer activity
GO:0015035	molecular_function	protein disulfide oxidoreductase activity
GO:0005515	molecular_function	protein binding
GO:0050220	molecular_function	prostaglandin-E synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.713
	SRR3591706	second leaf	18.029
	SRR3591707	mature leaf	10.742
	SRR3591708	Shoot apex	14.624
	SRR3591709	Stem	20.570
	SRR3591710	White floral bud	27.277
	SRR3591711	White flower	55.806
	SRR3591712	Green floral bud	24.938
	SRR3591713	Yellow flower	34.380
SRP173429	SRR8316895	Juvenile bud stage	18.010
	SRR8316896	Juvenile bud stage	28.360
	SRR8316897	Juvenile bud stage	13.549
	SRR8316894	Third green stage	12.719
	SRR8316900	Third green stage	38.881
	SRR8316901	Third green stage	33.452
	SRR8316898	Complete white stage	20.156
	SRR8316899	Complete white stage	43.845
	SRR8316903	Complete white stage	31.819
	SRR8316902	Silver flowering stage	28.969
	SRR8316904	Silver flowering stage	31.725
	SRR8316905	Silver flowering stage	16.701
	SRR8316906	Gold flowering stage	47.072
	SRR8316907	Gold flowering stage	42.842
	SRR8316908	Gold flowering stage	50.760
SRP132670	SRR6706286	Control	25.403
	SRR6706287	Light intensity 50%	26.320
	SRR6706288	Light intensity 20%	28.143
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.143
	CNS0095593	Slightly white alabastrum(diploid) 2	25.111
	CNS0095594	Slightly white alabastrum(diploid) 3	22.205
	CNS0095595	Whole white alabastrum(diploid) 2	18.754
	CNS0095596	Whole white alabastrum(diploid) 3	16.047
	CNS0095597	Whole white alabastrum(diploid) 4	16.273
	CNS0095598	Silvery flower (diploied) 1	19.784
	CNS0095599	Silvery flower (diploied) 2	19.327
	CNS0095600	Silvery flower (diploied) 3	48.171
	CNS0095601	Golden flower (diploid) 1	16.647
	CNS0095602	Golden flower (diploid) 2	36.926
	CNS0095603	Golden flower (diploid) 3	34.524
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.136
	CNS0095605	Slightly white alabastrum(tetraploid) 2	25.745
	CNS0095606	Slightly white alabastrum(tetraploid) 3	36.676
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.600
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.309
	CNS0095609	Whole white alabastrum(tetraploid) 3	32.993
	CNS0095610	Silvery flower (tetraploid) 1	65.288
	CNS0095611	Silvery flower (tetraploid) 2	50.891
	CNS0095612	Silvery flower (tetraploid) 3	36.662
	CNS0095613	Golden flower (tetraploid) 1	31.504
	CNS0095614	Golden flower (tetraploid) 2	46.682
	CNS0095615	Golden flower (tetraploid) 3	32.350
CRA001975	CRR073297	Stem 1	15.865
	CRR073298	Stem 2	13.696
	CRR073299	Stem 3	17.542
	CRR073300	Leaf 1	18.884
	CRR073301	Leaf 2	20.922
	CRR073302	Leaf 3	20.239
	CRR073303	Juvenile bud 1	28.084
	CRR073304	Juvenile bud 2	23.631
	CRR073305	Juvenile bud 3	24.239
	CRR073306	Third green 1	13.963
	CRR073307	Third green 2	13.723
	CRR073308	Third green 3	13.484
	CRR073309	Second white 1	24.879
	CRR073310	Second white 2	28.538
	CRR073311	Second white 3	19.960
	CRR073312	Silver flowering 1	14.159
	CRR073313	Silver flowering 2	16.778
	CRR073314	Silver flowering 3	20.118
	CRR073315	Gold flowering 1	13.683
	CRR073316	Gold flowering 2	12.324
	CRR073317	Gold flowering 3	10.302
	CRR073318	Tawny withering 1	17.313
	CRR073319	Tawny withering 2	22.050
	CRR073320	Tawny withering 3	19.575