Gene detail

Detail information of GWHGAAZE018161

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO98342.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q6NKX5\|POT1B_ARATH	7E-123	Protection of telomeres protein 1b
trEMBL	tr\|A0A068TQN6\|A0A068TQN6_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO98342.1}
TAIR10	AT5G06310.1	2E-102	Nucleic acid-binding, OB-fold-like protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	15863204	15869038	+
GWHAAZE00000005	mRNA	15863204	15869038	+
GWHAAZE00000005	exon	15863204	15863327	+
GWHAAZE00000005	exon	15865103	15865239	+
GWHAAZE00000005	exon	15866267	15866456	+
GWHAAZE00000005	exon	15866734	15866798	+
GWHAAZE00000005	exon	15866954	15867042	+
GWHAAZE00000005	exon	15867386	15867667	+
GWHAAZE00000005	exon	15867900	15867976	+
GWHAAZE00000005	exon	15868081	15868139	+
GWHAAZE00000005	exon	15868542	15868694	+
GWHAAZE00000005	exon	15868820	15869038	+
GWHAAZE00000005	CDS	15863204	15863327	+
GWHAAZE00000005	CDS	15865103	15865239	+
GWHAAZE00000005	CDS	15866267	15866456	+
GWHAAZE00000005	CDS	15866734	15866798	+
GWHAAZE00000005	CDS	15866954	15867042	+
GWHAAZE00000005	CDS	15867386	15867667	+
GWHAAZE00000005	CDS	15867900	15867976	+
GWHAAZE00000005	CDS	15868081	15868139	+
GWHAAZE00000005	CDS	15868542	15868694	+
GWHAAZE00000005	CDS	15868820	15869038	+

Transcript Sequence
>GWHTAAZE018183 ATGGCGAGAGACGACGATTACAAATTTCTTCAGATAGTGGATGCAATGGCTTCAATTAATCAAAAAGTGAACCTTATCGGCGTAGTCGTGGAGACCAGTATCCCTAAGCACACCAAGGGCACTGATTGTTTTTGTACTCTCAAGATTGTTGATGAATCACGTTCAAGCCCTGGGATTTCTGTCAATTTTTTTGCTGAAAATATGGAAAAGCTCCCCCGCATTGACTTAGGTGGTGATATAATTCAGCTTTCTCACGTTGTGATGAAAACCCATGGTTCCGAGGTTTATGCTCTTTTTAACAAGAAGTTCTCTTCATTTGCTTTATTTGAAGGGAAACATGGCACACAATTTGTTCCATATCAGGTTTCACCTAGATTTCATGCTAGAGAGCAAGACAAGAAGTTCATAGTGGATTTAAGAAAATGGTTGGTTGATTACAAGCTTGATATAGGGCCAAAAGATTCATCATCATTGAAAGAGATCAGGGAAGGAGAACATTATAATTTGGTTTGCAAGGTTCTGCATATATGTGAAGCAACAAAAGATGAATGGATGCTATTTGTTTGGGATGGAACAGACGCTCCACCGGTTACTATTCAAGCAAAGATTGAAGATGAAATGGAAAACCCGCTTCCATTACATTTGGAACAATTTTCTTTGTCAAGAGATGTCCTAAGCATGTTTCCGGTTGTGGGCACTATCTTAAGGGTAATTGTTGATCAAAGCAAAGATAAACTTGGCCTTCACTTGCTAAAGACCGGTAGGTGGTTGAAATTAATTAACATGAAATGTGAAGTTTATGCGGGATTTTGGCGTGGCATGCTTATGCCCTTCACTAAGCTCCGGTATTTGCCTGATGATGATGACCTTGTATTGCAGAGCCAAAGGACGTATGATGAGCGGGTACGTTCAAAATGGGCAAGGATGCCATTGCTGTGCTTTCCTTGGCCTTCTCATGTAACAGAGCCCGACTATCCTGACGTGCCTTTTGTTACTCTGATGAATGTTCTCACCTATCCGGAGGTAACAGCCAAATTCAGGTGTGTTGTTCGAGTTGTAGCAGCATTTCCATGGCGGGCTGAGGATTTCCGATCTCCACTTGGAACTTATAGGATTAGGCTGACCCTAGAGGACCCAACTGCCAGAATTCATGCATTTCTCTATGCCGAAGATGGGGTTGAGTTTTTTGGGGGTTATCCTTCTATTGAAGTATTGAGAAAGAAGCGGAACACTTTGCTTGGCATCAGTGAAAGTGATGATGATTGCAAGAAGTACGAGGATGCTCCCAGGAATCCACCCTGGGTGCAGTGCTGCCTAAAATCATATTACCTAAATAAAAGCGAAATTTGGGGAAGCAGACGTTATCGAATTTTTGCCACGAGGATGGTGGGTTGA

Network for GWHGAAZE018161

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0019

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02765.18	POT1	9	143	2.60E-32
PF16686.6	POT1PC	158	264	1.60E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0000723	biological_process	telomere maintenance
GO:0000784	cellular_component	nuclear chromosome, telomeric region
GO:0003677	molecular_function	DNA binding
GO:0043047	molecular_function	single-stranded telomeric DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.084
	SRR3591706	second leaf	11.416
	SRR3591707	mature leaf	10.689
	SRR3591708	Shoot apex	19.531
	SRR3591709	Stem	17.021
	SRR3591710	White floral bud	15.469
	SRR3591711	White flower	11.798
	SRR3591712	Green floral bud	14.118
	SRR3591713	Yellow flower	10.977
SRP173429	SRR8316895	Juvenile bud stage	6.677
	SRR8316896	Juvenile bud stage	8.917
	SRR8316897	Juvenile bud stage	3.046
	SRR8316894	Third green stage	3.514
	SRR8316900	Third green stage	10.396
	SRR8316901	Third green stage	8.606
	SRR8316898	Complete white stage	4.336
	SRR8316899	Complete white stage	13.594
	SRR8316903	Complete white stage	6.476
	SRR8316902	Silver flowering stage	3.509
	SRR8316904	Silver flowering stage	5.008
	SRR8316905	Silver flowering stage	2.167
	SRR8316906	Gold flowering stage	5.723
	SRR8316907	Gold flowering stage	7.056
	SRR8316908	Gold flowering stage	7.816
SRP132670	SRR6706286	Control	5.362
	SRR6706287	Light intensity 50%	5.456
	SRR6706288	Light intensity 20%	6.831
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.879
	CNS0095593	Slightly white alabastrum(diploid) 2	7.550
	CNS0095594	Slightly white alabastrum(diploid) 3	5.783
	CNS0095595	Whole white alabastrum(diploid) 2	6.387
	CNS0095596	Whole white alabastrum(diploid) 3	5.355
	CNS0095597	Whole white alabastrum(diploid) 4	6.225
	CNS0095598	Silvery flower (diploied) 1	8.730
	CNS0095599	Silvery flower (diploied) 2	4.810
	CNS0095600	Silvery flower (diploied) 3	4.012
	CNS0095601	Golden flower (diploid) 1	6.190
	CNS0095602	Golden flower (diploid) 2	4.061
	CNS0095603	Golden flower (diploid) 3	3.988
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.025
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.879
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.035
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.905
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.141
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.662
	CNS0095610	Silvery flower (tetraploid) 1	6.797
	CNS0095611	Silvery flower (tetraploid) 2	6.429
	CNS0095612	Silvery flower (tetraploid) 3	5.934
	CNS0095613	Golden flower (tetraploid) 1	3.903
	CNS0095614	Golden flower (tetraploid) 2	4.601
	CNS0095615	Golden flower (tetraploid) 3	3.591
CRA001975	CRR073297	Stem 1	5.770
	CRR073298	Stem 2	4.347
	CRR073299	Stem 3	2.022
	CRR073300	Leaf 1	5.376
	CRR073301	Leaf 2	4.041
	CRR073302	Leaf 3	2.663
	CRR073303	Juvenile bud 1	3.155
	CRR073304	Juvenile bud 2	1.035
	CRR073305	Juvenile bud 3	2.930
	CRR073306	Third green 1	0.676
	CRR073307	Third green 2	0.636
	CRR073308	Third green 3	1.051
	CRR073309	Second white 1	0.291
	CRR073310	Second white 2	1.158
	CRR073311	Second white 3	0.541
	CRR073312	Silver flowering 1	0.251
	CRR073313	Silver flowering 2	0.367
	CRR073314	Silver flowering 3	0.421
	CRR073315	Gold flowering 1	3.201
	CRR073316	Gold flowering 2	2.254
	CRR073317	Gold flowering 3	0.707
	CRR073318	Tawny withering 1	3.970
	CRR073319	Tawny withering 2	3.372
	CRR073320	Tawny withering 3	3.617