Gene detail

Detail information of GWHGAAZE018193

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009788324.1	0	PREDICTED: monoglyceride lipase-like [Nicotiana sylvestris]
Swissprot	tr\|Q9C942\|CSE_ARATH	3E-38	Caffeoylshikimate esterase
trEMBL	tr\|K4BJL8\|K4BJL8_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc03g098020.2.1}
TAIR10	AT1G73480.1	5E-133	alpha/beta-Hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	16421985	16428680	+
GWHAAZE00000005	mRNA	16421985	16428680	+
GWHAAZE00000005	exon	16421985	16422463	+
GWHAAZE00000005	exon	16425260	16425298	+
GWHAAZE00000005	exon	16425393	16425463	+
GWHAAZE00000005	exon	16427243	16427307	+
GWHAAZE00000005	exon	16427410	16427499	+
GWHAAZE00000005	exon	16427610	16427702	+
GWHAAZE00000005	exon	16428279	16428680	+
GWHAAZE00000005	CDS	16421985	16422463	+
GWHAAZE00000005	CDS	16425260	16425298	+
GWHAAZE00000005	CDS	16425393	16425463	+
GWHAAZE00000005	CDS	16427243	16427307	+
GWHAAZE00000005	CDS	16427410	16427499	+
GWHAAZE00000005	CDS	16427610	16427702	+
GWHAAZE00000005	CDS	16428279	16428680	+

Transcript Sequence
>GWHTAAZE018215 TTCAATTCAATGACGATAGAGGAAACGAACAACGCAGGAACATCGATAATGCTAACCTCCGGCGCAAGCGGACGCATTAACGCGCTTTTTTCACTGCAAGTATTGAAGAGTTTGTTAAAGCTAATCAACGCCTTTGTTCTGCTATTACTTTTCCCATTAAAGCGTTGCGTTTCGACGCTGCCTCCAATTTCCACGACATCGCCGGAGAAAGGAGGCAAGGAGGAGAAACAGGAGGGAGTCGCCAGTCACCGGAAGGGACCTGTGGTTAGGGTTCCGGCGACAGTGGTGTCGTGGAGGAGCAGCTCATCCGCGGCTGTGGTGGTGGAACATGACGTGGCGGCGAGGAGGGCCCTTGCGATTCGGAGGGTGATGCAGGATGATGGAGGTGATGATTCGGTGAGGGATTTTTCGCTGTTTGTCACATCCAGAGGCGACACCATGTTTACGCAATCGTGGACCCCTGTTTCTACCGAAGTGAGGGGTCTGGTTGTTCTTCTGCATGGCCTGAATGAACACAGTGGCAGATACAATGACTTTGCAAAGCAGCTGAATGCAAATGGATACAAGGTCTATGGAATGGATTGGGTTGGACATGGTGGCAGTGATGGCCTGCATGCGTACATCAACTCTCTTGATGATGCTGTTGATGACATGAAATCATTCCTTGGGAAGATTTTAGCCGAAAACCCAGGGCTTCCATGTTTTTGCTTTGGACACTCGACAGGTGCAGCCATAGTCCTCAAGACGGTACTTGACCCAAAGGTTGAAGCCCGCATAGCAGGCGTTATACTGACTTCACCTGCTGTTGGAGTTCAGCCATCACATCCTATTTTTACTGTACTTGCACCAATATTTGCCTTCTTGTTGCCCAAATACCAGTTCAGTGCTGCAAATAAGAAGGGCACGGTGGTCTCTCGGGACCCTGAGGCACTAGTGGCTAAATACTCAGACCCATTGGTGTACACTGGATCAATCAGAATAAGAACTGGCTATGAGATTCTTCAAATTGCATCATACTTGCAAAAGAACCTGAGCAGATTGACAGTGCCATTTCTAGTTCTCCATGGTACAGCTGATACAGTAACGGACCCCGGGGCTTCACAGAAACTATACAATGAGGCCTCATCAACCGACAAGACCATCAAACTCTTAGACGGGTTATTGCACGATTTGCTATTTGAACCTGAAAGAGAAGAAATAGTGAAGGGCATTATTGAATGGTTGAATAGTAGAATGTAA

Network for GWHGAAZE018193

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12146.9	Hydrolase_4	158	396	6.80E-75

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01054	MGLL	Metabolic pathways	map01100
		Glycerolipid metabolism	map00561
		Regulation of lipolysis in adipocytes	map04923
		Retrograde endocannabinoid signaling	map04723
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.302
	SRR3591706	second leaf	2.239
	SRR3591707	mature leaf	6.895
	SRR3591708	Shoot apex	9.640
	SRR3591709	Stem	11.420
	SRR3591710	White floral bud	63.041
	SRR3591711	White flower	21.644
	SRR3591712	Green floral bud	41.459
	SRR3591713	Yellow flower	36.169
SRP173429	SRR8316895	Juvenile bud stage	15.599
	SRR8316896	Juvenile bud stage	16.974
	SRR8316897	Juvenile bud stage	21.835
	SRR8316894	Third green stage	5.753
	SRR8316900	Third green stage	32.418
	SRR8316901	Third green stage	30.454
	SRR8316898	Complete white stage	6.623
	SRR8316899	Complete white stage	5.202
	SRR8316903	Complete white stage	8.134
	SRR8316902	Silver flowering stage	22.840
	SRR8316904	Silver flowering stage	24.539
	SRR8316905	Silver flowering stage	16.245
	SRR8316906	Gold flowering stage	42.872
	SRR8316907	Gold flowering stage	41.747
	SRR8316908	Gold flowering stage	35.085
SRP132670	SRR6706286	Control	33.489
	SRR6706287	Light intensity 50%	31.608
	SRR6706288	Light intensity 20%	26.338
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.693
	CNS0095593	Slightly white alabastrum(diploid) 2	28.367
	CNS0095594	Slightly white alabastrum(diploid) 3	40.506
	CNS0095595	Whole white alabastrum(diploid) 2	84.629
	CNS0095596	Whole white alabastrum(diploid) 3	91.823
	CNS0095597	Whole white alabastrum(diploid) 4	120.719
	CNS0095598	Silvery flower (diploied) 1	27.185
	CNS0095599	Silvery flower (diploied) 2	56.913
	CNS0095600	Silvery flower (diploied) 3	30.039
	CNS0095601	Golden flower (diploid) 1	87.553
	CNS0095602	Golden flower (diploid) 2	67.775
	CNS0095603	Golden flower (diploid) 3	62.890
	CNS0095604	Slightly white alabastrum(tetraploid) 1	58.670
	CNS0095605	Slightly white alabastrum(tetraploid) 2	62.393
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.289
	CNS0095607	Whole white alabastrum(tetraploid) 1	120.232
	CNS0095608	Whole white alabastrum(tetraploid) 2	134.001
	CNS0095609	Whole white alabastrum(tetraploid) 3	61.935
	CNS0095610	Silvery flower (tetraploid) 1	13.576
	CNS0095611	Silvery flower (tetraploid) 2	16.614
	CNS0095612	Silvery flower (tetraploid) 3	19.969
	CNS0095613	Golden flower (tetraploid) 1	13.618
	CNS0095614	Golden flower (tetraploid) 2	10.055
	CNS0095615	Golden flower (tetraploid) 3	21.840
CRA001975	CRR073297	Stem 1	11.611
	CRR073298	Stem 2	10.492
	CRR073299	Stem 3	8.719
	CRR073300	Leaf 1	39.154
	CRR073301	Leaf 2	23.206
	CRR073302	Leaf 3	11.827
	CRR073303	Juvenile bud 1	26.329
	CRR073304	Juvenile bud 2	21.219
	CRR073305	Juvenile bud 3	5.304
	CRR073306	Third green 1	109.886
	CRR073307	Third green 2	71.681
	CRR073308	Third green 3	77.875
	CRR073309	Second white 1	39.634
	CRR073310	Second white 2	35.783
	CRR073311	Second white 3	22.712
	CRR073312	Silver flowering 1	47.610
	CRR073313	Silver flowering 2	63.906
	CRR073314	Silver flowering 3	55.354
	CRR073315	Gold flowering 1	13.201
	CRR073316	Gold flowering 2	5.436
	CRR073317	Gold flowering 3	2.518
	CRR073318	Tawny withering 1	17.975
	CRR073319	Tawny withering 2	25.844
	CRR073320	Tawny withering 3	15.584