Gene detail

Detail information of GWHGAAZE018195

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007050821.1	6.77929E-96	Mitochondrial transcription termination factor family protein [Theobroma cacao]
trEMBL	tr\|A0A061DY70\|A0A061DY70_THECC	3E-96	Mitochondrial transcription termination factor family protein {ECO:0000313\|EMBL:EOX94978.1}
TAIR10	AT5G07900.1	3E-70	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	16451508	16452584	-
GWHAAZE00000005	mRNA	16451508	16452584	-
GWHAAZE00000005	exon	16451508	16452584	-
GWHAAZE00000005	CDS	16451508	16452584	-

Transcript Sequence
>GWHTAAZE018217 ATGATTCTTACTTATCTGCACAAGAAATTGCTACAAAACTGCGCTTTCAGCGCTTTAGAATCAACCCAACTGTACATTCTGCGTATAAAACCGTCTTTCAACATTAAACCTTACTCAAAAAAGGCCCATTATGAAATCCCAGAGAGAAAACGAAATTACATTCTATCAATATTCAAAACCTATGGCTTCACAGATAACCAAATCTCTACTCTCCTCATTAAGAGACCTGTACTACTCTCCTATCACCCACAAAAAATCCTCAAACCCAAATTGGACTTCTTCAAATCCATAGGTGTTTCTTCTTCAGACCTTGAGAATATACTCACTGTGGACCCTTTTGTCATTAGCCGCAACCTTGAGAATCAAGTTCTACCTTCGTATAAGTACTTGAAGAGTGTACTAAACTCAAACGAAAGTGTCGTTGCTGCAATTAAAAGGTCCACTTGGCTTCTTAAGCAAGACCTGCAAAAATTCTTGGCACCCAACATTGCCCTCTTGCATGAATGTGGGGTCCCGAGCTATAGAATTTTGATGCTGCTGAGAAGCCAACCTAGGGCATTGATTAAAGCTCCTGATAGGTTCAGGGAGATTGTGGAGGAGATTAAGAAAATGGGTTTTGATCCAGTTCGCAGTAAATTCATGGTTGCAATCCATGGATTGACTGGGTTTAGTAAGTTGAATTGGGAACAGAAGTGTGGGATTTATAGAAAGTGGGGCTGGTCCGATGATGAGATTCTTGAAGCTTTTAAGAAGGCACCCTCTTGCATGGCGGTTTCCGAGAAGAAAATAAACCTGGTGATGGATTTTTTTGTAAATAAAATGGGATGGGATGCATCAGATGTTGCAGATTCTCCCTATGCCGTTTCGTATAGCTTGGAGAATTGGACTGTTCCACGGTGTTTGGTTGTTCAATTTTTGTTATCAAAGGGTTTAATACATGAGAAACGCCTGAAGACCGTGATTATGGCGGATAAGAAGAGGTTCTTAAAAATGTTTGTGGATCCATATTGTGCTGAATTCCCCAAAGTGCTGACTTTGTATGAACCGAAAGTGGTTTCTCTAGAACTGGACACTTAA

Network for GWHGAAZE018195

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	55	207	2.30E-21
PF02536.15	mTERF	227	329	1.40E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.041
	SRR3591706	second leaf	2.401
	SRR3591707	mature leaf	2.483
	SRR3591708	Shoot apex	3.259
	SRR3591709	Stem	5.169
	SRR3591710	White floral bud	3.589
	SRR3591711	White flower	3.803
	SRR3591712	Green floral bud	3.711
	SRR3591713	Yellow flower	3.836
SRP173429	SRR8316895	Juvenile bud stage	1.390
	SRR8316896	Juvenile bud stage	1.470
	SRR8316897	Juvenile bud stage	1.038
	SRR8316894	Third green stage	0.758
	SRR8316900	Third green stage	3.192
	SRR8316901	Third green stage	2.635
	SRR8316898	Complete white stage	1.546
	SRR8316899	Complete white stage	5.470
	SRR8316903	Complete white stage	2.289
	SRR8316902	Silver flowering stage	1.543
	SRR8316904	Silver flowering stage	1.436
	SRR8316905	Silver flowering stage	1.023
	SRR8316906	Gold flowering stage	2.392
	SRR8316907	Gold flowering stage	1.736
	SRR8316908	Gold flowering stage	2.481
SRP132670	SRR6706286	Control	1.559
	SRR6706287	Light intensity 50%	1.572
	SRR6706288	Light intensity 20%	1.853
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.802
	CNS0095593	Slightly white alabastrum(diploid) 2	2.485
	CNS0095594	Slightly white alabastrum(diploid) 3	2.140
	CNS0095595	Whole white alabastrum(diploid) 2	1.570
	CNS0095596	Whole white alabastrum(diploid) 3	2.089
	CNS0095597	Whole white alabastrum(diploid) 4	2.724
	CNS0095598	Silvery flower (diploied) 1	2.870
	CNS0095599	Silvery flower (diploied) 2	3.074
	CNS0095600	Silvery flower (diploied) 3	3.388
	CNS0095601	Golden flower (diploid) 1	1.517
	CNS0095602	Golden flower (diploid) 2	2.843
	CNS0095603	Golden flower (diploid) 3	3.029
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.937
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.663
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.687
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.628
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.810
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.033
	CNS0095610	Silvery flower (tetraploid) 1	3.071
	CNS0095611	Silvery flower (tetraploid) 2	4.166
	CNS0095612	Silvery flower (tetraploid) 3	3.746
	CNS0095613	Golden flower (tetraploid) 1	1.315
	CNS0095614	Golden flower (tetraploid) 2	2.242
	CNS0095615	Golden flower (tetraploid) 3	4.620
CRA001975	CRR073297	Stem 1	1.754
	CRR073298	Stem 2	1.661
	CRR073299	Stem 3	1.591
	CRR073300	Leaf 1	2.828
	CRR073301	Leaf 2	2.147
	CRR073302	Leaf 3	1.522
	CRR073303	Juvenile bud 1	2.055
	CRR073304	Juvenile bud 2	1.584
	CRR073305	Juvenile bud 3	1.841
	CRR073306	Third green 1	0.536
	CRR073307	Third green 2	1.470
	CRR073308	Third green 3	0.677
	CRR073309	Second white 1	2.655
	CRR073310	Second white 2	0.982
	CRR073311	Second white 3	1.033
	CRR073312	Silver flowering 1	1.033
	CRR073313	Silver flowering 2	1.157
	CRR073314	Silver flowering 3	0.101
	CRR073315	Gold flowering 1	0.156
	CRR073316	Gold flowering 2	1.404
	CRR073317	Gold flowering 3	1.575
	CRR073318	Tawny withering 1	1.456
	CRR073319	Tawny withering 2	0.919
	CRR073320	Tawny withering 3	2.891