Gene detail

Detail information of GWHGAAZE018201

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002527680.1	0	glutamate decarboxylase, putative [Ricinus communis]
Swissprot	tr\|P54767\|DCE_SOLLC	7E-178	Glutamate decarboxylase
trEMBL	tr\|B9SNW1\|B9SNW1_RICCO	0	Glutamate decarboxylase {ECO:0000256\|RuleBase:RU361171}
TAIR10	AT5G17330.1	7E-128	glutamate decarboxylase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	16539496	16543173	-
GWHAAZE00000005	mRNA	16539496	16543173	-
GWHAAZE00000005	exon	16543100	16543173	-
GWHAAZE00000005	exon	16542727	16542913	-
GWHAAZE00000005	exon	16542111	16542188	-
GWHAAZE00000005	exon	16540895	16541363	-
GWHAAZE00000005	exon	16540253	16540305	-
GWHAAZE00000005	exon	16539496	16539684	-
GWHAAZE00000005	CDS	16543100	16543173	-
GWHAAZE00000005	CDS	16542727	16542913	-
GWHAAZE00000005	CDS	16542111	16542188	-
GWHAAZE00000005	CDS	16540895	16541363	-
GWHAAZE00000005	CDS	16540253	16540305	-
GWHAAZE00000005	CDS	16539496	16539684	-

Transcript Sequence
>GWHTAAZE018223 ATGGTGATAAGCACCACCAAATCCGACTCCGGCGAGCTTTTGCACTCCACTTTTGCATCCCTTTCTCTTCCCAGGTTCAAGATGCCAGAGAAATCGATACCGAAGGAAGCTGCTTATCAGATAATCAACGATGAATTGATGCTGGACGGCAATCCGAGGCTCAACTTGGCCTCCTTTGTTACTACTTGGATGGAACCAGAGTGCGATCGCCTCATCATGTCCTCCATTAATAAGAACTACGTTGACATGGATGATTACCCTAATCGGTGTGTGAATATGATAGCCCATCTATTTCATGCTCCTGTTGAAGAGGATGAGACTGCTGTTGGTGTGGGCACGGTTTGCTGGGAGAAATTTGCCAGATTCTTTGAAGTTGAGCTGAAGGAGGTGAAATTGAAGGAAGGCTACTACATAATGGATCCCGTGAAAGCAGTTGAAATGGTGGATGAGAACACCATATGTGTAGCCGCTATCTTAGGCTCTACCCTGACCGGCGAATTTGAGGGCGTGAAGCTCCTTAATGAACTCCTAAGTAAAAATAACAAGGAAACCGGGTGGAACACCCCAATCCACATTGATGCTGCCAGCGGAGGGTTCATTGCTCCATTTCTTTACCCGGATCTTGAATGGGACTTCCGTTTGCCATTGGTGAAGAGCATAAATGTTAGCGGTCATAAGCATGGCCTTGTATATGCAGGTGTTGGGTGGATTGTGTGGAGGTGCAAAGAGGAATTACCAGAAGACCTTGTATTTCACATTAACTACCTTGGATCTGATCAACCCACTTTCACCCTCAACTTTTCTAAAGGGTCCAGCCAAATAATTGCTCAGTATTATCAGTTGATAAGACTTGGCTTTGAGCCTGGCGGAGAGCTGGTAAGGGACATCGAGAAAGTTGTTAAAGATCTGGACGTGTATGTGGCCGAAACTGGAGGAGGCCATGTTGTTGGCACGGGTGTGGTTAAAAAGAGTGTTGGGCTGACTGAAGAAGAAGTAGCTAAGCATTGGAGGAGGATTGTGGATGGAAGGAAGACTAGTGGTGTCTGCTAG

Network for GWHGAAZE018201

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00282.20	Pyridoxal_deC	29	113	1.10E-11
PF00282.20	Pyridoxal_deC	114	310	9.50E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01580	E4.1.1.15, gadB, gadA, GAD	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Butanoate metabolism	map00650
		Alanine, aspartate and glutamate metabolism	map00250
		beta-Alanine metabolism	map00410
		Taurine and hypotaurine metabolism	map00430
		Quorum sensing	map02024
		GABAergic synapse	map04727

Gene Ontology

GO term	Ontology	Name
GO:0019752	biological_process	carboxylic acid metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0016831	molecular_function	carboxy-lyase activity
GO:0030170	molecular_function	pyridoxal phosphate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.083
	SRR3591706	second leaf	0.026
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.150
	SRR3591709	Stem	1.459
	SRR3591710	White floral bud	1.163
	SRR3591711	White flower	0.378
	SRR3591712	Green floral bud	3.063
	SRR3591713	Yellow flower	0.116
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.009
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.099
	SRR8316901	Third green stage	0.062
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.075
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.308
	SRR6706287	Light intensity 50%	0.152
	SRR6706288	Light intensity 20%	0.190
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.066
	CNS0095593	Slightly white alabastrum(diploid) 2	0.152
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.042
	CNS0095596	Whole white alabastrum(diploid) 3	0.128
	CNS0095597	Whole white alabastrum(diploid) 4	0.042
	CNS0095598	Silvery flower (diploied) 1	0.052
	CNS0095599	Silvery flower (diploied) 2	0.066
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.417
	CNS0095602	Golden flower (diploid) 2	0.043
	CNS0095603	Golden flower (diploid) 3	0.059
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.002
CRA001975	CRR073297	Stem 1	0.151
	CRR073298	Stem 2	0.058
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.178
	CRR073301	Leaf 2	0.187
	CRR073302	Leaf 3	0.299
	CRR073303	Juvenile bud 1	0.267
	CRR073304	Juvenile bud 2	0.085
	CRR073305	Juvenile bud 3	0.004
	CRR073306	Third green 1	0.041
	CRR073307	Third green 2	0.019
	CRR073308	Third green 3	0.036
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000