Gene detail

Detail information of GWHGAAZE018207

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011072047.1	PREDICTED: sucrose synthase 7-like [Sesamum indicum]
Swissprot	tr\|Q9FX32\|SUS6_ARATH	Sucrose synthase 6
trEMBL	tr\|D7TXS3\|D7TXS3_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI35298.3}
TAIR10	AT1G73370.1	sucrose synthase 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	16621505	16626390	+
GWHAAZE00000005	mRNA	16621505	16626390	+
GWHAAZE00000005	exon	16621505	16621627	+
GWHAAZE00000005	exon	16622098	16622252	+
GWHAAZE00000005	exon	16622376	16622571	+
GWHAAZE00000005	exon	16622993	16623111	+
GWHAAZE00000005	exon	16623219	16623435	+
GWHAAZE00000005	exon	16623638	16623733	+
GWHAAZE00000005	exon	16623827	16623990	+
GWHAAZE00000005	exon	16624295	16624457	+
GWHAAZE00000005	exon	16624671	16624837	+
GWHAAZE00000005	exon	16624954	16625178	+
GWHAAZE00000005	exon	16625427	16625993	+
GWHAAZE00000005	exon	16626117	16626390	+
GWHAAZE00000005	CDS	16621505	16621627	+
GWHAAZE00000005	CDS	16622098	16622252	+
GWHAAZE00000005	CDS	16622376	16622571	+
GWHAAZE00000005	CDS	16622993	16623111	+
GWHAAZE00000005	CDS	16623219	16623435	+
GWHAAZE00000005	CDS	16623638	16623733	+
GWHAAZE00000005	CDS	16623827	16623990	+
GWHAAZE00000005	CDS	16624295	16624457	+
GWHAAZE00000005	CDS	16624671	16624837	+
GWHAAZE00000005	CDS	16624954	16625178	+
GWHAAZE00000005	CDS	16625427	16625993	+
GWHAAZE00000005	CDS	16626117	16626390	+

Transcript Sequence
>GWHTAAZE018229 ATGGGAAAAAGATTGATGAAAACCCAAAATATATTAGACGAAGTGGAGAAATGTATAGAGGACAAGCTTGAAAGAACCAAGGTTTTGGATAGTTCACTTGGTCAGATTCTGAGTTCCACACAGGAGGCTGCAGTTGTTCCACCTAATGTAGCCTTTGCAGTGAGGAAAAACCCGGGCTGTTGGGAATACGTTAAGGTGAATGCGGATGATCTTGCTGTGGAAGCCATTACTGCTACCCAATTCTTGAAGTTCAAAGAGATGATCAATGATGATAATTGGGCAAACGACCAAAATGCATTGGAAGTAGATTTTGGGGCATTTGAGTTCTCGAGTCCAACCCTAACCCTCCCTTCTTCTATTGGAAACGGAGTCAAACTTGTTTCAAAGTTCATTACTACTAAGTTTAGTAGTGGGAATCTTGAGAGTGCCAAGCCTTTGCTTGATTACTTATTAGCTCTTAATCATCGAGGAGAGAATCTTATGATTAACGAGACACTGAATACGGTTTCAAAGCTTCAAACAGCATTGATAGTAGCCGAAGTCTTCGTTTCGGGCCTCCCAAAGGACACTCTGCATCATAAGTTTGAGCACAAGCTTAAAGAGTGGGGATTTGAGAAAGGGTGGGGAGATAATGCAGAAAGAGTTAGAGAAACAATGAGGATGGTCTCTGAGATACTTCAAGCGCCTGATCCGACTCAAATGGAATCATTATTTACGAGGCTTCCTCTTATATTCAACGTCGTCATCTTTTCTGTTCATGGCTACTTTGGCCAGTCTGATGTCCTTGGCTTGCCCGATACCGGAGGCCAGGTGGTTTACATTTTGGATCAAGTAAAAGCTTTAGAGGAAGAATTGCTGGTGAGAATTAAGCAGCAAGGCTTGAGTGTGAAGCCTCAGATACTTGTGGTGACTCGTTCGATACCAGATGCACAAGGGACAAAGTGCAATCAAGAAATGGAGCCTATTCTAAACACTACCCACTCCCACATTCTTAGGGTACCCTTTAGAACTGATAAAGGGATCCTTCCCCAATGGGTCTCTCGATTTGACATCTACCCCTACCTCGAGAGAATTTTCATATTCTTGAAATTTATGTTTCTCTCATATGATGAACAGGATGCCACTGCAAAGATTCTTGAGGTAATGGAATGTAAACCAGACCTCATACTTGGGAATTACACAGATGGAAACATTGTGGCATCTCTAATGGCTAGCAAACTTGGAGTAACTCTGGGAACCATTGCTCATGCTCTAGAAAAAACCAAGTACGGTGACTCGGATTTCAATTGGAAAGAGCTAGAGCCAAAGTACCACTTCTCGTGCCAATTCACTGCTGATATGATCGCCATGAATGCAGCTGATTTCATTATCACTAGCACATATCAAGAAATTGCCGGAAGTAAGAGTAGAGTTGGACAATATGAAAGCCATGCAGCCTTTACCATGCCTGGCTTAGCTAGAGTAGTTGCAGGCATCAATGTTTTTGATCCAAAGTTCAACTTGGCTGCCCCCGGGGCTGAACAAGTTGTATATTTTCCATTCACAGAGAAAAACAAGCGATTTACTCAATTTCATCCTTCAATTGAAGAACTTCTATATAGTAAGGAGGATAACGACGAACACATGGGATTTCTAGCGGACAGAAAAAAACCCATAATCTTTTCCATGGCAAGGCTCGATACGGTGAAAAACATTACTGGATTAACAGAGTGGTACGGTAAAAGCAAAAGGCTGAGGAATTTGGTCAACTTGGTGGTGGTGGCTGGATTCTTTGATCCATCAAAATCCAAAGACAGAGAAGAAATTGCGGAGATTAATAAGATGCATTCACTAATTGATAAATACCAACTTCAAGGTCACATTAGATGGATTGCGGCACAAAATGATCGGCACAGAAATGGGGAATTGTACCGGTGCATTGCTGATACAAAGGGGGCTTTTGTGCAGCCTGCACTTTATGAAGCCTTTGGGTTAACAGTTATTGAAGCAATGAACTGTGGATTGCCTACTTTTGCTACCATTCAAGGGGGACCTGCTGAGATTATTGTTGATGGGGTATCTGGCTTCCATATTGATCCTAAGGATGGCGATCAATCTGGTAAAAAGATTGCTGATTTCTTTGACAAGTGTAAGTTAGATGCTGGGTATTGGGACCGGATTTCTCAAGATGGGCTCAAGCGCATTTATGAATGCTACACATGGAAGATCTATGCAAACAAAGTATTGAACATGGGATCTATCTATGGCTTTTGGAGGCAATTGAACAAAGAAAAGAAGCAAGCCAAGCAAAGATACATTGACATGTTCTACAATCTCCAGTTCAAGAAATTGGTGAGAAATCTGAACCCAACCCAACTTTCCTTGATTAGGATGCGTTTGGATGCTTCTAAAAAACCACTTATTTCAGTTATTCCTCTGAGTAATATGATGATTTTTGTAGGTGAAAAATGTAGCAATCCCAAGTGA

Network for GWHGAAZE018207

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00862.20	Sucrose_synth	2	533	9.40E-259
PF00534.21	Glycos_transf_1	544	709	1.20E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00695	E2.4.1.13	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005985	biological_process	sucrose metabolic process
GO:0016157	molecular_function	sucrose synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	33.578
	SRR3591706	second leaf	3.204
	SRR3591707	mature leaf	0.671
	SRR3591708	Shoot apex	5.090
	SRR3591709	Stem	25.349
	SRR3591710	White floral bud	3.354
	SRR3591711	White flower	2.313
	SRR3591712	Green floral bud	7.830
	SRR3591713	Yellow flower	0.311
SRP173429	SRR8316895	Juvenile bud stage	3.549
	SRR8316896	Juvenile bud stage	4.083
	SRR8316897	Juvenile bud stage	1.710
	SRR8316894	Third green stage	3.000
	SRR8316900	Third green stage	12.625
	SRR8316901	Third green stage	16.086
	SRR8316898	Complete white stage	0.346
	SRR8316899	Complete white stage	2.368
	SRR8316903	Complete white stage	1.487
	SRR8316902	Silver flowering stage	0.261
	SRR8316904	Silver flowering stage	0.445
	SRR8316905	Silver flowering stage	0.165
	SRR8316906	Gold flowering stage	0.102
	SRR8316907	Gold flowering stage	0.228
	SRR8316908	Gold flowering stage	0.294
SRP132670	SRR6706286	Control	6.063
	SRR6706287	Light intensity 50%	7.427
	SRR6706288	Light intensity 20%	7.171
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.904
	CNS0095593	Slightly white alabastrum(diploid) 2	12.541
	CNS0095594	Slightly white alabastrum(diploid) 3	6.752
	CNS0095595	Whole white alabastrum(diploid) 2	5.895
	CNS0095596	Whole white alabastrum(diploid) 3	5.218
	CNS0095597	Whole white alabastrum(diploid) 4	2.641
	CNS0095598	Silvery flower (diploied) 1	0.812
	CNS0095599	Silvery flower (diploied) 2	0.569
	CNS0095600	Silvery flower (diploied) 3	0.161
	CNS0095601	Golden flower (diploid) 1	0.535
	CNS0095602	Golden flower (diploid) 2	0.069
	CNS0095603	Golden flower (diploid) 3	0.234
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.799
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.261
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.684
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.261
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.929
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.567
	CNS0095610	Silvery flower (tetraploid) 1	0.058
	CNS0095611	Silvery flower (tetraploid) 2	0.144
	CNS0095612	Silvery flower (tetraploid) 3	0.274
	CNS0095613	Golden flower (tetraploid) 1	0.016
	CNS0095614	Golden flower (tetraploid) 2	0.349
	CNS0095615	Golden flower (tetraploid) 3	0.096
CRA001975	CRR073297	Stem 1	3.482
	CRR073298	Stem 2	3.581
	CRR073299	Stem 3	1.834
	CRR073300	Leaf 1	8.719
	CRR073301	Leaf 2	9.419
	CRR073302	Leaf 3	7.766
	CRR073303	Juvenile bud 1	2.507
	CRR073304	Juvenile bud 2	3.120
	CRR073305	Juvenile bud 3	3.293
	CRR073306	Third green 1	0.810
	CRR073307	Third green 2	1.306
	CRR073308	Third green 3	0.503
	CRR073309	Second white 1	0.001
	CRR073310	Second white 2	0.026
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.562
	CRR073316	Gold flowering 2	0.784
	CRR073317	Gold flowering 3	0.506
	CRR073318	Tawny withering 1	5.366
	CRR073319	Tawny withering 2	3.533
	CRR073320	Tawny withering 3	5.376