Detail information of GWHGAAZE018208


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009601642.10PREDICTED: uncharacterized protein LOC104096897 [Nicotiana tomentosiformis]
trEMBLtr|M1CEP4|M1CEP4_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400065845}
TAIR10AT1G73240.12E-142Without detailed annotation

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1662771416632791+
GWHAAZE00000005mRNA1662771416632791+
GWHAAZE00000005exon1662771416628274+
GWHAAZE00000005exon1662950216629726+
GWHAAZE00000005exon1662987216630255+
GWHAAZE00000005exon1663231516632791+
GWHAAZE00000005CDS1662771416628274+
GWHAAZE00000005CDS1662950216629726+
GWHAAZE00000005CDS1662987216630255+
GWHAAZE00000005CDS1663231516632791+
Transcript Sequence

Network for GWHGAAZE018208

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF09531.11Ndc1_Nup1173567.00E-12
PF09531.11Ndc1_Nup3805066.50E-09
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K14315NDC1, TMEM48 RNA transport map03013

Gene Ontology

GO term OntologyName

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE018208.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 302.557.51012.51517.52022.52527.53032.5353…37.5Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf18.208
SRR3591706second leaf9.211
SRR3591707mature leaf13.754
SRR3591708Shoot apex21.294
SRR3591709Stem18.184
SRR3591710White floral bud24.174
SRR3591711White flower32.996
SRR3591712Green floral bud25.719
SRR3591713Yellow flower22.143
SRP173429 SRR8316895Juvenile bud stage 13.246
SRR8316896Juvenile bud stage 15.201
SRR8316897Juvenile bud stage 6.708
SRR8316894Third green stage 8.412
SRR8316900Third green stage 25.428
SRR8316901Third green stage 23.027
SRR8316898Complete white stage 9.975
SRR8316899Complete white stage 33.417
SRR8316903Complete white stage 17.240
SRR8316902Silver flowering stage18.540
SRR8316904Silver flowering stage20.944
SRR8316905Silver flowering stage11.097
SRR8316906Gold flowering stage 22.110
SRR8316907Gold flowering stage 28.357
SRR8316908Gold flowering stage 24.280
SRP132670SRR6706286Control18.689
SRR6706287Light intensity 50%18.512
SRR6706288Light intensity 20%21.857
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.075
CNS0095593Slightly white alabastrum(diploid) 215.922
CNS0095594Slightly white alabastrum(diploid) 314.419
CNS0095595Whole white alabastrum(diploid) 213.080
CNS0095596Whole white alabastrum(diploid) 311.363
CNS0095597Whole white alabastrum(diploid) 411.208
CNS0095598Silvery flower (diploied) 116.093
CNS0095599Silvery flower (diploied) 214.669
CNS0095600Silvery flower (diploied) 325.786
CNS0095601Golden flower (diploid) 110.173
CNS0095602Golden flower (diploid) 217.133
CNS0095603Golden flower (diploid) 316.991
CNS0095604Slightly white alabastrum(tetraploid) 113.463
CNS0095605Slightly white alabastrum(tetraploid) 212.746
CNS0095606Slightly white alabastrum(tetraploid) 321.921
CNS0095607Whole white alabastrum(tetraploid) 19.404
CNS0095608Whole white alabastrum(tetraploid) 26.903
CNS0095609Whole white alabastrum(tetraploid) 316.868
CNS0095610Silvery flower (tetraploid) 123.897
CNS0095611Silvery flower (tetraploid) 222.488
CNS0095612Silvery flower (tetraploid) 317.258
CNS0095613Golden flower (tetraploid) 18.635
CNS0095614Golden flower (tetraploid) 215.566
CNS0095615Golden flower (tetraploid) 312.005
CRA001975CRR073297Stem 118.128
CRR073298Stem 216.896
CRR073299Stem 321.235
CRR073300Leaf 120.173
CRR073301Leaf 219.721
CRR073302Leaf 322.019
CRR073303Juvenile bud 126.998
CRR073304Juvenile bud 222.518
CRR073305Juvenile bud 331.985
CRR073306Third green 110.857
CRR073307Third green 212.249
CRR073308Third green 313.002
CRR073309Second white 111.541
CRR073310Second white 210.266
CRR073311Second white 39.084
CRR073312Silver flowering 14.417
CRR073313Silver flowering 26.863
CRR073314Silver flowering 36.311
CRR073315Gold flowering 110.073
CRR073316Gold flowering 211.317
CRR073317Gold flowering 310.451
CRR073318Tawny withering 120.115
CRR073319Tawny withering 219.874
CRR073320Tawny withering 318.302