Detail information of GWHGAAZE018215


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010249658.18.1293E-107PREDICTED: E3 ubiquitin-protein ligase RING1-like [Nelumbo nucifera]
Swissprottr|P0CH30|RING1_GOSHI2E-90E3 ubiquitin-protein ligase RING1
trEMBLtr|A5C2A6|A5C2A6_VITVI2E-105Putative uncharacterized protein {ECO:0000313|EMBL:CAN79596.1}
TAIR10AT3G19950.11E-63RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1674084716741701+
GWHAAZE00000005mRNA1674084716741701+
GWHAAZE00000005exon1674084716741701+
GWHAAZE00000005CDS1674084716741701+
Transcript Sequence

Network for GWHGAAZE018215

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21421844.50E-12
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf54.007
SRR3591706second leaf24.448
SRR3591707mature leaf21.318
SRR3591708Shoot apex38.297
SRR3591709Stem42.128
SRR3591710White floral bud54.022
SRR3591711White flower53.845
SRR3591712Green floral bud51.226
SRR3591713Yellow flower47.409
SRP173429 SRR8316895Juvenile bud stage 22.570
SRR8316896Juvenile bud stage 28.195
SRR8316897Juvenile bud stage 13.171
SRR8316894Third green stage 13.173
SRR8316900Third green stage 38.560
SRR8316901Third green stage 40.952
SRR8316898Complete white stage 26.130
SRR8316899Complete white stage 71.074
SRR8316903Complete white stage 49.752
SRR8316902Silver flowering stage26.439
SRR8316904Silver flowering stage34.009
SRR8316905Silver flowering stage19.132
SRR8316906Gold flowering stage 57.808
SRR8316907Gold flowering stage 61.516
SRR8316908Gold flowering stage 57.852
SRP132670SRR6706286Control58.956
SRR6706287Light intensity 50%55.706
SRR6706288Light intensity 20%55.066
CNP0000432CNS0095592Slightly white alabastrum(diploid) 132.593
CNS0095593Slightly white alabastrum(diploid) 235.966
CNS0095594Slightly white alabastrum(diploid) 330.172
CNS0095595Whole white alabastrum(diploid) 230.337
CNS0095596Whole white alabastrum(diploid) 329.090
CNS0095597Whole white alabastrum(diploid) 432.119
CNS0095598Silvery flower (diploied) 129.527
CNS0095599Silvery flower (diploied) 232.739
CNS0095600Silvery flower (diploied) 353.655
CNS0095601Golden flower (diploid) 128.985
CNS0095602Golden flower (diploid) 246.885
CNS0095603Golden flower (diploid) 342.913
CNS0095604Slightly white alabastrum(tetraploid) 129.656
CNS0095605Slightly white alabastrum(tetraploid) 225.424
CNS0095606Slightly white alabastrum(tetraploid) 345.111
CNS0095607Whole white alabastrum(tetraploid) 125.187
CNS0095608Whole white alabastrum(tetraploid) 223.545
CNS0095609Whole white alabastrum(tetraploid) 335.798
CNS0095610Silvery flower (tetraploid) 146.720
CNS0095611Silvery flower (tetraploid) 247.268
CNS0095612Silvery flower (tetraploid) 356.325
CNS0095613Golden flower (tetraploid) 134.867
CNS0095614Golden flower (tetraploid) 245.279
CNS0095615Golden flower (tetraploid) 354.416
CRA001975CRR073297Stem 144.390
CRR073298Stem 241.834
CRR073299Stem 348.586
CRR073300Leaf 155.097
CRR073301Leaf 261.547
CRR073302Leaf 347.042
CRR073303Juvenile bud 158.027
CRR073304Juvenile bud 256.392
CRR073305Juvenile bud 361.193
CRR073306Third green 163.557
CRR073307Third green 266.104
CRR073308Third green 366.755
CRR073309Second white 159.254
CRR073310Second white 252.492
CRR073311Second white 343.770
CRR073312Silver flowering 149.891
CRR073313Silver flowering 250.736
CRR073314Silver flowering 348.460
CRR073315Gold flowering 126.565
CRR073316Gold flowering 229.301
CRR073317Gold flowering 333.536
CRR073318Tawny withering 157.982
CRR073319Tawny withering 256.035
CRR073320Tawny withering 355.462