Detail information of GWHGAAZE018225


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAN77786.12.47346E-38hypothetical protein VITISV_023232 [Vitis vinifera]
Swissprottr|Q9LUN5|FB156_ARATH0.0000008Putative F-box protein At3g17620
trEMBLtr|A5CBR7|A5CBR7_VITVI9E-39Putative uncharacterized protein {ECO:0000313|EMBL:CAN77786.1}
TAIR10AT3G23960.10.00000001F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1683172116832662+
GWHAAZE00000005mRNA1683172116832662+
GWHAAZE00000005exon1683172116832662+
GWHAAZE00000005CDS1683172116832662+
Transcript Sequence

Network for GWHGAAZE018225

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0234


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.112
SRR3591706second leaf0.637
SRR3591707mature leaf0.585
SRR3591708Shoot apex1.841
SRR3591709Stem1.653
SRR3591710White floral bud0.603
SRR3591711White flower0.910
SRR3591712Green floral bud1.829
SRR3591713Yellow flower0.588
SRP173429 SRR8316895Juvenile bud stage 2.520
SRR8316896Juvenile bud stage 10.967
SRR8316897Juvenile bud stage 2.305
SRR8316894Third green stage 3.477
SRR8316900Third green stage 1.962
SRR8316901Third green stage 2.030
SRR8316898Complete white stage 0.518
SRR8316899Complete white stage 1.138
SRR8316903Complete white stage 0.733
SRR8316902Silver flowering stage0.527
SRR8316904Silver flowering stage1.020
SRR8316905Silver flowering stage0.136
SRR8316906Gold flowering stage 0.654
SRR8316907Gold flowering stage 0.156
SRR8316908Gold flowering stage 1.044
SRP132670SRR6706286Control0.914
SRR6706287Light intensity 50%1.343
SRR6706288Light intensity 20%1.232
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.413
CNS0095593Slightly white alabastrum(diploid) 21.704
CNS0095594Slightly white alabastrum(diploid) 35.588
CNS0095595Whole white alabastrum(diploid) 20.928
CNS0095596Whole white alabastrum(diploid) 30.815
CNS0095597Whole white alabastrum(diploid) 40.055
CNS0095598Silvery flower (diploied) 10.612
CNS0095599Silvery flower (diploied) 20.337
CNS0095600Silvery flower (diploied) 31.210
CNS0095601Golden flower (diploid) 10.167
CNS0095602Golden flower (diploid) 20.998
CNS0095603Golden flower (diploid) 30.855
CNS0095604Slightly white alabastrum(tetraploid) 11.062
CNS0095605Slightly white alabastrum(tetraploid) 21.410
CNS0095606Slightly white alabastrum(tetraploid) 31.670
CNS0095607Whole white alabastrum(tetraploid) 10.627
CNS0095608Whole white alabastrum(tetraploid) 20.521
CNS0095609Whole white alabastrum(tetraploid) 31.045
CNS0095610Silvery flower (tetraploid) 10.657
CNS0095611Silvery flower (tetraploid) 20.783
CNS0095612Silvery flower (tetraploid) 30.491
CNS0095613Golden flower (tetraploid) 10.444
CNS0095614Golden flower (tetraploid) 20.379
CNS0095615Golden flower (tetraploid) 30.377
CRA001975CRR073297Stem 11.056
CRR073298Stem 22.560
CRR073299Stem 30.911
CRR073300Leaf 10.464
CRR073301Leaf 20.482
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.492
CRR073304Juvenile bud 20.556
CRR073305Juvenile bud 30.349
CRR073306Third green 10.321
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.657
CRR073310Second white 20.002
CRR073311Second white 30.000
CRR073312Silver flowering 10.014
CRR073313Silver flowering 20.174
CRR073314Silver flowering 30.100
CRR073315Gold flowering 10.270
CRR073316Gold flowering 20.061
CRR073317Gold flowering 30.278
CRR073318Tawny withering 10.238
CRR073319Tawny withering 20.161
CRR073320Tawny withering 30.030