Detail information of GWHGAAZE018228


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDO97935.12.1576E-172unnamed protein product [Coffea canephora]
Swissprottr|O65456|PLY16_ARATH4E-94Probable pectate lyase 16 (Precursor)
trEMBLtr|A0A068TNL9|A0A068TNL9_COFCA8E-173Pectate lyase {ECO:0000256|RuleBase:RU361123}
TAIR10AT5G09280.13E-95Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1686927916870775-
GWHAAZE00000005mRNA1686927916870775-
GWHAAZE00000005exon1686927916869503-
GWHAAZE00000005exon1686960316869758-
GWHAAZE00000005exon1686987216870228-
GWHAAZE00000005exon1687031716870775-
GWHAAZE00000005CDS1687031716870775-
GWHAAZE00000005CDS1686987216870228-
GWHAAZE00000005CDS1686960316869758-
GWHAAZE00000005CDS1686927916869503-
Transcript Sequence

Network for GWHGAAZE018228

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00544.20Pectate_lyase_41283151.10E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01728pel Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040
Quorum sensingmap02024

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.936
SRR3591707mature leaf1.739
SRR3591708Shoot apex0.519
SRR3591709Stem0.110
SRR3591710White floral bud3.706
SRR3591711White flower0.849
SRR3591712Green floral bud6.558
SRR3591713Yellow flower0.099
SRP173429 SRR8316895Juvenile bud stage 0.256
SRR8316896Juvenile bud stage 1.614
SRR8316897Juvenile bud stage 0.490
SRR8316894Third green stage 0.520
SRR8316900Third green stage 3.817
SRR8316901Third green stage 6.767
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.072
SRR8316903Complete white stage 0.025
SRR8316902Silver flowering stage0.123
SRR8316904Silver flowering stage0.217
SRR8316905Silver flowering stage0.057
SRR8316906Gold flowering stage 0.034
SRR8316907Gold flowering stage 0.088
SRR8316908Gold flowering stage 0.222
SRP132670SRR6706286Control1.559
SRR6706287Light intensity 50%1.772
SRR6706288Light intensity 20%1.269
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.344
CNS0095593Slightly white alabastrum(diploid) 23.157
CNS0095594Slightly white alabastrum(diploid) 35.294
CNS0095595Whole white alabastrum(diploid) 23.561
CNS0095596Whole white alabastrum(diploid) 36.143
CNS0095597Whole white alabastrum(diploid) 44.250
CNS0095598Silvery flower (diploied) 10.529
CNS0095599Silvery flower (diploied) 20.552
CNS0095600Silvery flower (diploied) 30.166
CNS0095601Golden flower (diploid) 10.322
CNS0095602Golden flower (diploid) 20.425
CNS0095603Golden flower (diploid) 30.561
CNS0095604Slightly white alabastrum(tetraploid) 17.629
CNS0095605Slightly white alabastrum(tetraploid) 27.704
CNS0095606Slightly white alabastrum(tetraploid) 30.183
CNS0095607Whole white alabastrum(tetraploid) 16.234
CNS0095608Whole white alabastrum(tetraploid) 26.013
CNS0095609Whole white alabastrum(tetraploid) 33.254
CNS0095610Silvery flower (tetraploid) 10.121
CNS0095611Silvery flower (tetraploid) 20.149
CNS0095612Silvery flower (tetraploid) 30.368
CNS0095613Golden flower (tetraploid) 10.544
CNS0095614Golden flower (tetraploid) 20.256
CNS0095615Golden flower (tetraploid) 30.505
CRA001975CRR073297Stem 11.440
CRR073298Stem 20.870
CRR073299Stem 30.641
CRR073300Leaf 11.686
CRR073301Leaf 21.954
CRR073302Leaf 31.208
CRR073303Juvenile bud 11.835
CRR073304Juvenile bud 21.536
CRR073305Juvenile bud 30.147
CRR073306Third green 10.539
CRR073307Third green 21.167
CRR073308Third green 30.992
CRR073309Second white 10.000
CRR073310Second white 20.864
CRR073311Second white 30.693
CRR073312Silver flowering 10.358
CRR073313Silver flowering 21.408
CRR073314Silver flowering 30.652
CRR073315Gold flowering 11.139
CRR073316Gold flowering 20.516
CRR073317Gold flowering 30.932
CRR073318Tawny withering 10.494
CRR073319Tawny withering 21.443
CRR073320Tawny withering 30.330