Gene detail

Detail information of GWHGAAZE018232

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006372279.1	0	hypothetical protein POPTR_0018s14920g [Populus trichocarpa]
Swissprot	tr\|Q42656\|AGAL_COFAR	0	Alpha-galactosidase (Precursor)
trEMBL	tr\|U5FJK2\|U5FJK2_POPTR	0	Alpha-galactosidase {ECO:0000256\|RuleBase:RU361168}
TAIR10	AT5G08370.1	2E-160	alpha-galactosidase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	16921012	16927002	+
GWHAAZE00000005	mRNA	16921012	16927002	+
GWHAAZE00000005	exon	16921012	16921105	+
GWHAAZE00000005	exon	16921202	16921236	+
GWHAAZE00000005	exon	16921342	16921445	+
GWHAAZE00000005	exon	16921551	16921626	+
GWHAAZE00000005	exon	16921705	16921763	+
GWHAAZE00000005	exon	16922219	16922284	+
GWHAAZE00000005	exon	16923211	16923294	+
GWHAAZE00000005	exon	16924002	16924066	+
GWHAAZE00000005	exon	16924928	16925010	+
GWHAAZE00000005	exon	16925351	16925441	+
GWHAAZE00000005	exon	16925554	16925603	+
GWHAAZE00000005	exon	16925712	16925852	+
GWHAAZE00000005	exon	16926717	16927002	+
GWHAAZE00000005	CDS	16921012	16921105	+
GWHAAZE00000005	CDS	16921202	16921236	+
GWHAAZE00000005	CDS	16921342	16921445	+
GWHAAZE00000005	CDS	16921551	16921626	+
GWHAAZE00000005	CDS	16921705	16921763	+
GWHAAZE00000005	CDS	16922219	16922284	+
GWHAAZE00000005	CDS	16923211	16923294	+
GWHAAZE00000005	CDS	16924002	16924066	+
GWHAAZE00000005	CDS	16924928	16925010	+
GWHAAZE00000005	CDS	16925351	16925441	+
GWHAAZE00000005	CDS	16925554	16925603	+
GWHAAZE00000005	CDS	16925712	16925852	+
GWHAAZE00000005	CDS	16926717	16926803	+
GWHAAZE00000005	three_prime_UTR	16926804	16927002	+

Transcript Sequence
>GWHTAAZE018254 ATGATTAATTCACTGTTATTCTTTAACAAATTAATAGCGGATGCAATGGTATCAACGGGACTCTCTGCTGTGGGATACAAGTACATAAATTTAGACGATTGTTGGGCAGAACTTAACAGAGATTCTAAGGGGAATTTGGTTCCTAAAGCTGCAACATTTCCCTCTGGAATCAAAGCCCTCGCAGATTACGTTCATAGCAAAGGACTCAAACTAGGAATTTATTCTGATGCTGGGACTCAAACATGTAGTAAAACTATGCCTGGATCATTAGATCATGAAGAACAGGATGCCAAGACTTTTGCCTCATGGGGAGTTGATTACTTGAAATATGATAATTGCAACAATAATGGAATAAGCGCCAAAGATAGGTATCCTAAAATGAGCAAAGCGTTACTAAACTCTGGAAGGCCCATCTTTTTCTCTCTATGTGAATGGGGACAGGAAGATCCTGCAACTTGGGCCCAACAAGTTGGAAATAGTTGGAGAACAACTGGTGACATTTCTGATAATTGGAATAGCATGACTTCTCTGGCAGATCAAAATGACCAATGGGCATCCTATGCCAAGCCAGGTGGATGGAACGATCCTGACATGTTGGAAGTTGGAAATGGAGGCATGACCATACCAGAGTATCGTTCTCATTTTAGCATCTGGGCATTAGCTAAGGCACCACTGCTTATTGGGTGTGATGTTCGGGCGATGGATAATGTGACGTTTGAGCTACTTAGCAATAAAGAAGTTATTGCAGTTAATCAAGATAAACTTGGAGTGCAAGGGAAAAAGGTTAAGCAAAATGGGGATTTGGAGGTTTGGGCTGGGCCACTGAGTGGGAGGAGAGTAGCAATGGCACTATGGAACAGAGGGGGTTCAAAAGCTACCATCACTGCTTATTGGTCTGATATTGGCCTCAAACCGACCTCTCTTGTTAGCGCTCGCGATTTATGGGCGCATTCAACACAAAAGTCGGTGAAGGGACAACTCTCTGCGGAGGTAGATTCTCACGACTGCAAGATGTATGTACTCACTCCTCAATAAAGAGAAGGTTTGAATTGCATGCATGAAAAACAAGTTTGAGGCATAATCAATTAAGTTTATGCATAGGGAGGGTTTCATTTCATGGTTGTAAGTTAATTTTGAGTAACATTAGTTGTTAAATAAAGAAAAATAGATGTCTCGACCTTATGAAGTATATGGTAAATGGGGTTGATGTAATCCAATGAGGAAGATTTGGCAT

Network for GWHGAAZE018232

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16499.6	Melibiase_2	11	253	4.00E-76
PF17801.2	Melibiase_C	266	341	1.30E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07407	E3.2.1.22B, galA, rafA	Metabolic pathways	map01100
		Galactose metabolism	map00052
		Glycerolipid metabolism	map00561
		Sphingolipid metabolism	map00600
		Glycosphingolipid biosynthesis - globo and isoglobo series	map00603

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	49.374
	SRR3591706	second leaf	46.282
	SRR3591707	mature leaf	31.998
	SRR3591708	Shoot apex	17.059
	SRR3591709	Stem	14.005
	SRR3591710	White floral bud	30.753
	SRR3591711	White flower	4.438
	SRR3591712	Green floral bud	57.501
	SRR3591713	Yellow flower	1.986
SRP173429	SRR8316895	Juvenile bud stage	5.024
	SRR8316896	Juvenile bud stage	9.036
	SRR8316897	Juvenile bud stage	5.813
	SRR8316894	Third green stage	12.200
	SRR8316900	Third green stage	48.934
	SRR8316901	Third green stage	42.686
	SRR8316898	Complete white stage	14.048
	SRR8316899	Complete white stage	37.044
	SRR8316903	Complete white stage	16.010
	SRR8316902	Silver flowering stage	1.005
	SRR8316904	Silver flowering stage	3.614
	SRR8316905	Silver flowering stage	0.934
	SRR8316906	Gold flowering stage	0.298
	SRR8316907	Gold flowering stage	0.349
	SRR8316908	Gold flowering stage	3.658
SRP132670	SRR6706286	Control	53.839
	SRR6706287	Light intensity 50%	58.199
	SRR6706288	Light intensity 20%	54.938
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.468
	CNS0095593	Slightly white alabastrum(diploid) 2	45.588
	CNS0095594	Slightly white alabastrum(diploid) 3	18.018
	CNS0095595	Whole white alabastrum(diploid) 2	29.314
	CNS0095596	Whole white alabastrum(diploid) 3	41.398
	CNS0095597	Whole white alabastrum(diploid) 4	25.373
	CNS0095598	Silvery flower (diploied) 1	2.902
	CNS0095599	Silvery flower (diploied) 2	4.810
	CNS0095600	Silvery flower (diploied) 3	3.383
	CNS0095601	Golden flower (diploid) 1	0.711
	CNS0095602	Golden flower (diploid) 2	1.019
	CNS0095603	Golden flower (diploid) 3	1.855
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.697
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.798
	CNS0095606	Slightly white alabastrum(tetraploid) 3	55.007
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.205
	CNS0095608	Whole white alabastrum(tetraploid) 2	23.831
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.834
	CNS0095610	Silvery flower (tetraploid) 1	8.327
	CNS0095611	Silvery flower (tetraploid) 2	3.404
	CNS0095612	Silvery flower (tetraploid) 3	4.121
	CNS0095613	Golden flower (tetraploid) 1	0.199
	CNS0095614	Golden flower (tetraploid) 2	5.545
	CNS0095615	Golden flower (tetraploid) 3	1.152
CRA001975	CRR073297	Stem 1	15.603
	CRR073298	Stem 2	19.203
	CRR073299	Stem 3	5.870
	CRR073300	Leaf 1	51.277
	CRR073301	Leaf 2	53.178
	CRR073302	Leaf 3	38.576
	CRR073303	Juvenile bud 1	41.627
	CRR073304	Juvenile bud 2	25.751
	CRR073305	Juvenile bud 3	48.638
	CRR073306	Third green 1	3.952
	CRR073307	Third green 2	6.144
	CRR073308	Third green 3	7.333
	CRR073309	Second white 1	0.302
	CRR073310	Second white 2	0.147
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.038
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	5.372
	CRR073316	Gold flowering 2	7.341
	CRR073317	Gold flowering 3	5.582
	CRR073318	Tawny withering 1	4.414
	CRR073319	Tawny withering 2	1.306
	CRR073320	Tawny withering 3	10.504