Gene detail

Detail information of GWHGAAZE018239

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP47049.1	1.1209E-105	hypothetical protein JCGZ_10776 [Jatropha curcas]
Swissprot	tr\|O23685\|AP1S2_ARATH	1E-103	AP-1 complex subunit sigma-2
trEMBL	tr\|A0A067LR17\|A0A067LR17_JATCU	4E-106	Uncharacterized protein {ECO:0000313\|EMBL:KDP47049.1}
TAIR10	AT4G35410.2	1E-81	Clathrin adaptor complex small chain family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	16978926	16980553	-
GWHAAZE00000005	mRNA	16978926	16980553	-
GWHAAZE00000005	exon	16980551	16980553	-
GWHAAZE00000005	exon	16980129	16980215	-
GWHAAZE00000005	exon	16979933	16980024	-
GWHAAZE00000005	exon	16979726	16979834	-
GWHAAZE00000005	exon	16979572	16979607	-
GWHAAZE00000005	exon	16979405	16979491	-
GWHAAZE00000005	exon	16978926	16979274	-
GWHAAZE00000005	CDS	16980551	16980553	-
GWHAAZE00000005	CDS	16980129	16980215	-
GWHAAZE00000005	CDS	16979933	16980024	-
GWHAAZE00000005	CDS	16979726	16979834	-
GWHAAZE00000005	CDS	16979572	16979607	-
GWHAAZE00000005	CDS	16979405	16979491	-
GWHAAZE00000005	CDS	16979203	16979274	-
GWHAAZE00000005	three_prime_UTR	16978926	16979202	-

Transcript Sequence
>GWHTAAZE018261 ATGATTCACTTTGTCCTCCTCATTAGTCGGCAAGGAAAAGTGAGGTTGACAAAATGGTATTCCCCTTACTCCCAAAAGGAAAGAAGTAAGATTATAAGAGAGCTGAGCGGAGTTATTCTGACCCGAGGTCCAAAGCTGTGTAATTTTGTCGAATGGAAGGGATATCAAGTTGTCTATAAGAGGTACGCGAGCCTGTATTTCTGCATGTGCATTGATCGGGATGATAATGAATTAGAGATCCTAGAAATAATTCACCATTATGTCGAGATATTAGACCGCTATTTTGGCAATGTATGCGAATTGGATTTGATCTTCAACTTCCACAAGGCTTACTATGTATTGGATGAACTTTTAATTGCCGGAGAACTTCAGGAGTCCAGCAAGAAAACTATTATACGGCTCATAGACACACAGGATTCAATGGTGGAAACTGCGAAAGAGCAGGCCAGTACACTAGGTAACATAATAGCCCAGACCACCAAGTAGGGCAGGCAAATTGTGCCAGATGCCAGCAGCGATAGCTTCATTTTGAAGTTCTTTGTTTTGGTTTTAATTAATGATTTGCGTTTGTATTCTTAAAGCTGATTTTGTAATAAACATTGATGATTCACACCCTGTAGAATCTTCGTGGGGTTCAGATTAAGTTTTTTCTTATCTTTCAGTCGTAGCTGTAATGCCTCATACACTACCTTATATTGTTACTTCCAAAAAATTTAAACTACTTGGGAGTAACTATTGTGCAAGTATCCCGGCAATCTTCTTC

Network for GWHGAAZE018239

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01217.21	Clat_adaptor_s	1	141	2.50E-56

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12394	AP1S1_2	Lysosome	map04142

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0016192	biological_process	vesicle-mediated transport
GO:0015031	biological_process	protein transport
GO:0030117	cellular_component	membrane coat

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.138
	SRR3591706	second leaf	0.111
	SRR3591707	mature leaf	0.038
	SRR3591708	Shoot apex	0.809
	SRR3591709	Stem	0.327
	SRR3591710	White floral bud	9.223
	SRR3591711	White flower	0.299
	SRR3591712	Green floral bud	38.487
	SRR3591713	Yellow flower	0.182
SRP173429	SRR8316895	Juvenile bud stage	7.589
	SRR8316896	Juvenile bud stage	24.731
	SRR8316897	Juvenile bud stage	13.525
	SRR8316894	Third green stage	8.031
	SRR8316900	Third green stage	49.122
	SRR8316901	Third green stage	45.894
	SRR8316898	Complete white stage	0.074
	SRR8316899	Complete white stage	0.444
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.030
	SRR8316905	Silver flowering stage	0.120
	SRR8316906	Gold flowering stage	0.279
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	8.694
	SRR6706287	Light intensity 50%	8.868
	SRR6706288	Light intensity 20%	8.632
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.794
	CNS0095593	Slightly white alabastrum(diploid) 2	26.039
	CNS0095594	Slightly white alabastrum(diploid) 3	39.331
	CNS0095595	Whole white alabastrum(diploid) 2	48.005
	CNS0095596	Whole white alabastrum(diploid) 3	70.390
	CNS0095597	Whole white alabastrum(diploid) 4	55.928
	CNS0095598	Silvery flower (diploied) 1	0.103
	CNS0095599	Silvery flower (diploied) 2	0.314
	CNS0095600	Silvery flower (diploied) 3	0.046
	CNS0095601	Golden flower (diploid) 1	0.147
	CNS0095602	Golden flower (diploid) 2	0.183
	CNS0095603	Golden flower (diploid) 3	0.213
	CNS0095604	Slightly white alabastrum(tetraploid) 1	60.747
	CNS0095605	Slightly white alabastrum(tetraploid) 2	63.747
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.083
	CNS0095607	Whole white alabastrum(tetraploid) 1	87.023
	CNS0095608	Whole white alabastrum(tetraploid) 2	97.442
	CNS0095609	Whole white alabastrum(tetraploid) 3	54.575
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.148
	CNS0095612	Silvery flower (tetraploid) 3	0.406
	CNS0095613	Golden flower (tetraploid) 1	0.163
	CNS0095614	Golden flower (tetraploid) 2	0.248
	CNS0095615	Golden flower (tetraploid) 3	0.095
CRA001975	CRR073297	Stem 1	4.398
	CRR073298	Stem 2	5.241
	CRR073299	Stem 3	2.735
	CRR073300	Leaf 1	8.983
	CRR073301	Leaf 2	8.723
	CRR073302	Leaf 3	5.962
	CRR073303	Juvenile bud 1	4.567
	CRR073304	Juvenile bud 2	7.111
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.301
	CRR073307	Third green 2	0.180
	CRR073308	Third green 3	0.051
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.060
	CRR073312	Silver flowering 1	0.270
	CRR073313	Silver flowering 2	0.314
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.400
	CRR073316	Gold flowering 2	0.176
	CRR073317	Gold flowering 3	0.049
	CRR073318	Tawny withering 1	0.124
	CRR073319	Tawny withering 2	0.570
	CRR073320	Tawny withering 3	0.408