Detail information of GWHGAAZE018245


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002283154.10PREDICTED: glutamate--tRNA ligase, chloroplastic/mitochondrial [Vitis vinifera]
Swissprottr|Q43794|SYE_TOBAC0Glutamate--tRNA ligase, chloroplastic/mitochondrial (Precursor)
trEMBLtr|D7U4Q0|D7U4Q0_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI37719.3}
TAIR10AT5G64050.10glutamate tRNA synthetase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1705566217061361-
GWHAAZE00000005mRNA1705566217061361-
GWHAAZE00000005exon1706109317061361-
GWHAAZE00000005exon1706088117060999-
GWHAAZE00000005exon1705997717060098-
GWHAAZE00000005exon1705927617059458-
GWHAAZE00000005exon1705902017059168-
GWHAAZE00000005exon1705885917058907-
GWHAAZE00000005exon1705864417058745-
GWHAAZE00000005exon1705837117058473-
GWHAAZE00000005exon1705819917058262-
GWHAAZE00000005exon1705796317058077-
GWHAAZE00000005exon1705735717057457-
GWHAAZE00000005exon1705635117056507-
GWHAAZE00000005exon1705566217055906-
GWHAAZE00000005CDS1706109317061361-
GWHAAZE00000005CDS1706088117060999-
GWHAAZE00000005CDS1705997717060098-
GWHAAZE00000005CDS1705927617059458-
GWHAAZE00000005CDS1705902017059168-
GWHAAZE00000005CDS1705885917058907-
GWHAAZE00000005CDS1705864417058745-
GWHAAZE00000005CDS1705837117058473-
GWHAAZE00000005CDS1705819917058262-
GWHAAZE00000005CDS1705796317058077-
GWHAAZE00000005CDS1705735717057457-
GWHAAZE00000005CDS1705635117056507-
GWHAAZE00000005CDS1705567617055906-
GWHAAZE00000005three_prime_UTR1705566217055675-
Transcript Sequence

Network for GWHGAAZE018245

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00749.22tRNA-synt_1c613887.70E-102
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01885EARS, gltX Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Porphyrin and chlorophyll metabolismmap00860
Aminoacyl-tRNA biosynthesismap00970

Gene Ontology

GO term OntologyName
GO:0006424biological_processglutamyl-tRNA aminoacylation
GO:0043039biological_processtRNA aminoacylation
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0008270molecular_functionzinc ion binding
GO:0000166molecular_functionnucleotide binding
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005524molecular_functionATP binding
GO:0000049molecular_functiontRNA binding
GO:0004818molecular_functionglutamate-tRNA ligase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf26.091
SRR3591706second leaf35.653
SRR3591707mature leaf20.637
SRR3591708Shoot apex33.379
SRR3591709Stem22.427
SRR3591710White floral bud28.229
SRR3591711White flower30.107
SRR3591712Green floral bud32.770
SRR3591713Yellow flower27.264
SRP173429 SRR8316895Juvenile bud stage 24.314
SRR8316896Juvenile bud stage 26.097
SRR8316897Juvenile bud stage 16.108
SRR8316894Third green stage 13.096
SRR8316900Third green stage 38.401
SRR8316901Third green stage 32.083
SRR8316898Complete white stage 13.642
SRR8316899Complete white stage 34.019
SRR8316903Complete white stage 21.839
SRR8316902Silver flowering stage16.819
SRR8316904Silver flowering stage22.708
SRR8316905Silver flowering stage11.131
SRR8316906Gold flowering stage 38.540
SRR8316907Gold flowering stage 37.548
SRR8316908Gold flowering stage 42.301
SRP132670SRR6706286Control27.194
SRR6706287Light intensity 50%31.598
SRR6706288Light intensity 20%35.100
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.699
CNS0095593Slightly white alabastrum(diploid) 217.582
CNS0095594Slightly white alabastrum(diploid) 315.823
CNS0095595Whole white alabastrum(diploid) 219.512
CNS0095596Whole white alabastrum(diploid) 318.186
CNS0095597Whole white alabastrum(diploid) 414.785
CNS0095598Silvery flower (diploied) 127.293
CNS0095599Silvery flower (diploied) 222.067
CNS0095600Silvery flower (diploied) 338.893
CNS0095601Golden flower (diploid) 119.454
CNS0095602Golden flower (diploid) 232.669
CNS0095603Golden flower (diploid) 330.059
CNS0095604Slightly white alabastrum(tetraploid) 124.546
CNS0095605Slightly white alabastrum(tetraploid) 220.707
CNS0095606Slightly white alabastrum(tetraploid) 336.690
CNS0095607Whole white alabastrum(tetraploid) 115.699
CNS0095608Whole white alabastrum(tetraploid) 217.186
CNS0095609Whole white alabastrum(tetraploid) 336.586
CNS0095610Silvery flower (tetraploid) 137.885
CNS0095611Silvery flower (tetraploid) 240.601
CNS0095612Silvery flower (tetraploid) 333.078
CNS0095613Golden flower (tetraploid) 122.375
CNS0095614Golden flower (tetraploid) 237.180
CNS0095615Golden flower (tetraploid) 330.292
CRA001975CRR073297Stem 135.622
CRR073298Stem 230.394
CRR073299Stem 330.044
CRR073300Leaf 129.749
CRR073301Leaf 228.635
CRR073302Leaf 328.301
CRR073303Juvenile bud 129.287
CRR073304Juvenile bud 217.682
CRR073305Juvenile bud 331.930
CRR073306Third green 110.622
CRR073307Third green 29.686
CRR073308Third green 39.859
CRR073309Second white 121.821
CRR073310Second white 219.913
CRR073311Second white 318.605
CRR073312Silver flowering 124.922
CRR073313Silver flowering 224.738
CRR073314Silver flowering 324.889
CRR073315Gold flowering 130.267
CRR073316Gold flowering 240.245
CRR073317Gold flowering 319.438
CRR073318Tawny withering 120.012
CRR073319Tawny withering 219.124
CRR073320Tawny withering 322.473