Gene detail

Detail information of GWHGAAZE018250

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009340792.1	0	PREDICTED: aminoacylase-1-like isoform X2 [Pyrus x bretschneideri]
trEMBL	tr\|F6I0Q2\|F6I0Q2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60518.1}
TAIR10	AT4G38220.1	5E-174	Peptidase M20/M25/M40 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	17088044	17091271	+
GWHAAZE00000005	mRNA	17088044	17091271	+
GWHAAZE00000005	exon	17088044	17088951	+
GWHAAZE00000005	exon	17090067	17090204	+
GWHAAZE00000005	exon	17090386	17090625	+
GWHAAZE00000005	exon	17090993	17091271	+
GWHAAZE00000005	five_prime_UTR	17088044	17088099	+
GWHAAZE00000005	CDS	17088100	17088951	+
GWHAAZE00000005	CDS	17090067	17090204	+
GWHAAZE00000005	CDS	17090386	17090625	+
GWHAAZE00000005	CDS	17090993	17091106	+
GWHAAZE00000005	three_prime_UTR	17091107	17091271	+

Transcript Sequence
>GWHTAAZE018272 TATCTTCTTCGGTAGACACGTCGGGGATCCAGAACTGAGAAACAACGGAGAGAGGAATGAGAAGCAGCAAAGATTACCACCCTCATCTCCTCTTCGTCTTATTCGTCCTCTCCTTCACTCTTACATCCTCCGAAGATGACACCTCCACTATAATATCAAGGTTCCAACGATACCTCCAAATCAACACAGCCCAGCCAAATCCCAACTACCACGAATCTTCCAAATTCCTCCTCTCCCAGGCCCATTCCCTCTCCCTCCATTCCCAAACCCTTGAATTCGCCCCCGGCAAACCCCTAATCCTCCTCAAATGGCCCGGCACCAACCCCTCCCTCCCCTCAATCCTACTCAACTCCCACACCGATGTCGTTCCCTCCGAGCCCCACAAGTGGGTCCACCCTCCCCTCTCCGCTCACCTCGATCCCCACACCGGCCATATTTACGCCCGCGGCTCACAGGACATGAAGTGCGTGGGCCTCCAGTACCTCGAGGCCATCCGCAAATTGAAGGCCTCGGGGTTCGTTCCAGTCCGTGATGTCTATCTTTCATTCGTCCCCGATGAAGAGATTGGTGGACACGATGGGGCCGAGAAGTTTGCGGAGTCCGAGGTTTTTAATGAGATGAATGTGGGTATTCTGCTTGATGAAGGTTTGGCTTCGCCGAGTGAGGAGTATAGGTTGTTTTATGCGGAGAGGTGCCCTATGTGGTTGGTTATTAAGGCTGTTGGGGCCCCTGGACATGGGGCCAAGCTTTATGATAATACTGCTATGGAGAATTTGATGAAGAGTATTGAGAGTGTGAGGAGGTTTAGGGCTGCTCAGTTTGATTTGGTCAAGGCTGGTTTGAAGGCTGAAGGTGAGGTTGTTTCTGTTAATATGGTCTTCTTGAAAGCTGGAACCCCATCTCCCACAGGATTTGTCATGAATTTACAACCATCCGAGGCACAAGCTGGTTTTGATGTTAGAGTCCCACCGACTGCTGATCAAGCGGCGTTGGAGAGAAGAATCGCCGAGGAATGGGCACCTGCTTCACGTAACATGACATTCGAGTTCAAGCAGAAGGTTTCTGTGTATGACAAGTCCGGAAAGCCAATCCTCACAGCATCGGACAGTTCAAATCCTTGGTGGGCCCTGTTAGAAGGGGCTATTAAGAAAGCTAATGGAAAAGTTGGAAAGCCAGAGATCTTTCCTGCTTCAACAGATGCTCGATACTTTCGGCTACGTGGAGTGCCAGCAATCGGATTTTCTCCTATGGCCAACACTCCCATTCTACTTCACGACCACAATGAGTTTTTGAACAAGGATGAATACTTAAAGGGGATCGATATTTATGAATCTATAATCAAAACATATGCATCTTATGTTGAGCACACAAGTGATGGAGCTTCTAGAGACGAGTTGTGAAAGCAGTAGGCTCCTTTCCTGAGTTGCAATTCGACTATTTTGGTCGTCAAATGTTTCTGGTCCTATTGTATCCATATAAACTGAGCCAGGAATATAGCATTTTTCTCTGTATTTTAGCAGAATTATGGGGAACTTAACGATCATTCATCCATATGCATCTCAACT

Network for GWHGAAZE018250

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01546.29	Peptidase_M20	96	429	2.30E-36

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14677	ACY1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Arginine biosynthesis	map00220

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0006520	biological_process	cellular amino acid metabolic process
GO:0005737	cellular_component	cytoplasm
GO:0016787	molecular_function	hydrolase activity
GO:0008237	molecular_function	metallopeptidase activity
GO:0004046	molecular_function	aminoacylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	84.878
	SRR3591706	second leaf	69.648
	SRR3591707	mature leaf	63.994
	SRR3591708	Shoot apex	97.086
	SRR3591709	Stem	80.948
	SRR3591710	White floral bud	50.659
	SRR3591711	White flower	51.693
	SRR3591712	Green floral bud	68.362
	SRR3591713	Yellow flower	44.161
SRP173429	SRR8316895	Juvenile bud stage	45.457
	SRR8316896	Juvenile bud stage	58.931
	SRR8316897	Juvenile bud stage	26.115
	SRR8316894	Third green stage	22.560
	SRR8316900	Third green stage	87.525
	SRR8316901	Third green stage	68.813
	SRR8316898	Complete white stage	18.265
	SRR8316899	Complete white stage	68.501
	SRR8316903	Complete white stage	28.072
	SRR8316902	Silver flowering stage	14.435
	SRR8316904	Silver flowering stage	17.055
	SRR8316905	Silver flowering stage	9.362
	SRR8316906	Gold flowering stage	35.675
	SRR8316907	Gold flowering stage	44.146
	SRR8316908	Gold flowering stage	68.392
SRP132670	SRR6706286	Control	80.100
	SRR6706287	Light intensity 50%	66.937
	SRR6706288	Light intensity 20%	67.513
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	58.086
	CNS0095593	Slightly white alabastrum(diploid) 2	58.133
	CNS0095594	Slightly white alabastrum(diploid) 3	58.939
	CNS0095595	Whole white alabastrum(diploid) 2	59.301
	CNS0095596	Whole white alabastrum(diploid) 3	58.370
	CNS0095597	Whole white alabastrum(diploid) 4	48.551
	CNS0095598	Silvery flower (diploied) 1	71.607
	CNS0095599	Silvery flower (diploied) 2	62.267
	CNS0095600	Silvery flower (diploied) 3	56.018
	CNS0095601	Golden flower (diploid) 1	52.407
	CNS0095602	Golden flower (diploid) 2	70.445
	CNS0095603	Golden flower (diploid) 3	65.451
	CNS0095604	Slightly white alabastrum(tetraploid) 1	65.254
	CNS0095605	Slightly white alabastrum(tetraploid) 2	58.964
	CNS0095606	Slightly white alabastrum(tetraploid) 3	80.114
	CNS0095607	Whole white alabastrum(tetraploid) 1	48.481
	CNS0095608	Whole white alabastrum(tetraploid) 2	46.505
	CNS0095609	Whole white alabastrum(tetraploid) 3	76.792
	CNS0095610	Silvery flower (tetraploid) 1	78.617
	CNS0095611	Silvery flower (tetraploid) 2	113.835
	CNS0095612	Silvery flower (tetraploid) 3	81.781
	CNS0095613	Golden flower (tetraploid) 1	38.537
	CNS0095614	Golden flower (tetraploid) 2	73.816
	CNS0095615	Golden flower (tetraploid) 3	37.644
CRA001975	CRR073297	Stem 1	64.222
	CRR073298	Stem 2	64.479
	CRR073299	Stem 3	78.973
	CRR073300	Leaf 1	73.947
	CRR073301	Leaf 2	70.926
	CRR073302	Leaf 3	71.377
	CRR073303	Juvenile bud 1	75.673
	CRR073304	Juvenile bud 2	71.579
	CRR073305	Juvenile bud 3	82.863
	CRR073306	Third green 1	12.620
	CRR073307	Third green 2	11.309
	CRR073308	Third green 3	11.747
	CRR073309	Second white 1	22.478
	CRR073310	Second white 2	9.941
	CRR073311	Second white 3	6.724
	CRR073312	Silver flowering 1	11.896
	CRR073313	Silver flowering 2	11.808
	CRR073314	Silver flowering 3	11.984
	CRR073315	Gold flowering 1	44.664
	CRR073316	Gold flowering 2	52.471
	CRR073317	Gold flowering 3	48.108
	CRR073318	Tawny withering 1	53.445
	CRR073319	Tawny withering 2	43.630
	CRR073320	Tawny withering 3	40.199