Gene detail

Detail information of GWHGAAZE018259

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAC80702.1	0	N-acetylglucosaminyltransferase I [Nicotiana tabacum]
Swissprot	tr\|Q9XGM8\|MGAT1_ARATH	3E-164	Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase
trEMBL	tr\|Q8VXD3\|Q8VXD3_TOBAC	0	N-acetylglucosaminyltransferase I {ECO:0000313\|EMBL:CAC80702.1}
TAIR10	AT4G38240.2	2E-125	alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	17150933	17154166	-
GWHAAZE00000005	mRNA	17150933	17154166	-
GWHAAZE00000005	exon	17154098	17154166	-
GWHAAZE00000005	exon	17153505	17153555	-
GWHAAZE00000005	exon	17153146	17153233	-
GWHAAZE00000005	exon	17152818	17152880	-
GWHAAZE00000005	exon	17152402	17152436	-
GWHAAZE00000005	exon	17152230	17152306	-
GWHAAZE00000005	exon	17152086	17152131	-
GWHAAZE00000005	exon	17151902	17151964	-
GWHAAZE00000005	exon	17151741	17151807	-
GWHAAZE00000005	exon	17151587	17151655	-
GWHAAZE00000005	exon	17151419	17151488	-
GWHAAZE00000005	exon	17151177	17151238	-
GWHAAZE00000005	exon	17150933	17151042	-
GWHAAZE00000005	CDS	17154098	17154166	-
GWHAAZE00000005	CDS	17153505	17153555	-
GWHAAZE00000005	CDS	17153146	17153233	-
GWHAAZE00000005	CDS	17152818	17152880	-
GWHAAZE00000005	CDS	17152402	17152436	-
GWHAAZE00000005	CDS	17152230	17152306	-
GWHAAZE00000005	CDS	17152086	17152131	-
GWHAAZE00000005	CDS	17151902	17151964	-
GWHAAZE00000005	CDS	17151741	17151807	-
GWHAAZE00000005	CDS	17151587	17151655	-
GWHAAZE00000005	CDS	17151419	17151488	-
GWHAAZE00000005	CDS	17151177	17151238	-
GWHAAZE00000005	CDS	17150933	17151042	-

Transcript Sequence
>GWHTAAZE018281 ATGGCGAAGTTGTCTTGCGATTTCCGCTACCTTCTAATCGTCGCGGCAGTGGCTTTCATCTACATCCAGATGCGTCTTTTCACCACACAGTCTCAATATGCTGATCGGCTAGCTGCTGCGGTGGAAGCAGAAAACCATTGCACAAGTCAAATGCGGTTGCTAATTGATCAGATTAGTACGCAACAGGGGCGGATAGTAGCCATAGAAGAAGAAAGGAATCGTCGAGACCAGGAATGCAGACAATTAAGGGCTCTTGTTCAAGATCTTGAAAGGAAGGGCCTCAAGAAATTGGTTGATGAAGTACAGGTGCCAGTTGCAGCCGTTGTGGTTATGGCTTGTAACCGTGCCGATTATCTTGAAAAGACTATCAAATCTATATTGAAATACCAAAAGCCTGTTGCATCAAAGTATCCTCTTTTCGTATCCCAGGATGGACCAAATCCCGATGTTAGGAGTAAGGCTTTGAGTTATGATCAGCTAACCTACATGCAGCACTTGGATTATAAACCCGTCCATACTGAAAGACCAGGGGAGTTAATTGCATACTACAAAATTGCAAGTCATTACAAATGGGCATTGGATCAATTGTTTTACCAACATAATTTTAGCCGAGTAATCATACTTGAAGATGATATGGAGATTTCCCCTGATTTTTTTGACTATTTTGAGGCTGGAGCCACCCTGCTTGACAGTGATAAGTCAATTATGGCTATTTCCTCATGGAATGACAATGGGCAAAAGCAGTTTGTGCATGATCCATATGTACTTTATCGCTCAGATTTTTTTCCTGGTCTTGGATGGATGCTCTCTAAATCAACATGGAATGAACTTTCTCCAAAGTGGCCGAAAGCATATCCTTTTGGACTATAA

Network for GWHGAAZE018259

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03071.16	GNT-I	14	285	7.10E-114

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00726	MGAT1	Metabolic pathways	map01100
		N-Glycan biosynthesis	map00510
		Various types of N-glycan biosynthesis	map00513

Gene Ontology

GO term	Ontology	Name
GO:0006486	biological_process	protein glycosylation
GO:0008375	molecular_function	acetylglucosaminyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	48.413
	SRR3591706	second leaf	17.002
	SRR3591707	mature leaf	13.129
	SRR3591708	Shoot apex	23.556
	SRR3591709	Stem	34.857
	SRR3591710	White floral bud	43.241
	SRR3591711	White flower	41.100
	SRR3591712	Green floral bud	43.178
	SRR3591713	Yellow flower	42.034
SRP173429	SRR8316895	Juvenile bud stage	19.399
	SRR8316896	Juvenile bud stage	28.320
	SRR8316897	Juvenile bud stage	15.731
	SRR8316894	Third green stage	11.760
	SRR8316900	Third green stage	35.701
	SRR8316901	Third green stage	31.855
	SRR8316898	Complete white stage	16.020
	SRR8316899	Complete white stage	47.256
	SRR8316903	Complete white stage	21.665
	SRR8316902	Silver flowering stage	10.811
	SRR8316904	Silver flowering stage	20.935
	SRR8316905	Silver flowering stage	8.939
	SRR8316906	Gold flowering stage	27.363
	SRR8316907	Gold flowering stage	24.872
	SRR8316908	Gold flowering stage	23.791
SRP132670	SRR6706286	Control	23.807
	SRR6706287	Light intensity 50%	23.818
	SRR6706288	Light intensity 20%	26.849
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.536
	CNS0095593	Slightly white alabastrum(diploid) 2	16.339
	CNS0095594	Slightly white alabastrum(diploid) 3	18.076
	CNS0095595	Whole white alabastrum(diploid) 2	18.945
	CNS0095596	Whole white alabastrum(diploid) 3	17.874
	CNS0095597	Whole white alabastrum(diploid) 4	16.121
	CNS0095598	Silvery flower (diploied) 1	15.301
	CNS0095599	Silvery flower (diploied) 2	11.639
	CNS0095600	Silvery flower (diploied) 3	25.941
	CNS0095601	Golden flower (diploid) 1	13.520
	CNS0095602	Golden flower (diploid) 2	25.259
	CNS0095603	Golden flower (diploid) 3	20.409
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.407
	CNS0095605	Slightly white alabastrum(tetraploid) 2	29.851
	CNS0095606	Slightly white alabastrum(tetraploid) 3	44.358
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.962
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.461
	CNS0095609	Whole white alabastrum(tetraploid) 3	39.077
	CNS0095610	Silvery flower (tetraploid) 1	32.194
	CNS0095611	Silvery flower (tetraploid) 2	31.000
	CNS0095612	Silvery flower (tetraploid) 3	36.456
	CNS0095613	Golden flower (tetraploid) 1	12.161
	CNS0095614	Golden flower (tetraploid) 2	26.989
	CNS0095615	Golden flower (tetraploid) 3	14.835
CRA001975	CRR073297	Stem 1	18.169
	CRR073298	Stem 2	17.967
	CRR073299	Stem 3	13.615
	CRR073300	Leaf 1	24.139
	CRR073301	Leaf 2	19.657
	CRR073302	Leaf 3	22.535
	CRR073303	Juvenile bud 1	17.478
	CRR073304	Juvenile bud 2	18.485
	CRR073305	Juvenile bud 3	22.553
	CRR073306	Third green 1	10.869
	CRR073307	Third green 2	13.052
	CRR073308	Third green 3	12.945
	CRR073309	Second white 1	10.295
	CRR073310	Second white 2	9.369
	CRR073311	Second white 3	9.072
	CRR073312	Silver flowering 1	8.378
	CRR073313	Silver flowering 2	4.520
	CRR073314	Silver flowering 3	5.469
	CRR073315	Gold flowering 1	9.242
	CRR073316	Gold flowering 2	13.431
	CRR073317	Gold flowering 3	7.509
	CRR073318	Tawny withering 1	28.189
	CRR073319	Tawny withering 2	20.028
	CRR073320	Tawny withering 3	23.093