Gene detail

Detail information of GWHGAAZE018267

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_008235959.1	PREDICTED: Niemann-Pick C1 protein isoform X2 [Prunus mume]
trEMBL	tr\|A0A061DYD6\|A0A061DYD6_THECC	Hedgehog receptor, putative isoform 1 {ECO:0000313\|EMBL:EOX97437.1}
TAIR10	AT4G38350.1	Patched family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	17222751	17253126	+
GWHAAZE00000005	mRNA	17222751	17253126	+
GWHAAZE00000005	exon	17222751	17222885	+
GWHAAZE00000005	exon	17224114	17224230	+
GWHAAZE00000005	exon	17224886	17225039	+
GWHAAZE00000005	exon	17226494	17226741	+
GWHAAZE00000005	exon	17226895	17227074	+
GWHAAZE00000005	exon	17227671	17227747	+
GWHAAZE00000005	exon	17227857	17227981	+
GWHAAZE00000005	exon	17228995	17229149	+
GWHAAZE00000005	exon	17229898	17229993	+
GWHAAZE00000005	exon	17230085	17230231	+
GWHAAZE00000005	exon	17232008	17232106	+
GWHAAZE00000005	exon	17233060	17233155	+
GWHAAZE00000005	exon	17233468	17233575	+
GWHAAZE00000005	exon	17234174	17234287	+
GWHAAZE00000005	exon	17234456	17234539	+
GWHAAZE00000005	exon	17238160	17238288	+
GWHAAZE00000005	exon	17238978	17239176	+
GWHAAZE00000005	exon	17239382	17239586	+
GWHAAZE00000005	exon	17240176	17240219	+
GWHAAZE00000005	exon	17245180	17245310	+
GWHAAZE00000005	exon	17245506	17245574	+
GWHAAZE00000005	exon	17246820	17246909	+
GWHAAZE00000005	exon	17247477	17247626	+
GWHAAZE00000005	exon	17247936	17248001	+
GWHAAZE00000005	exon	17248159	17248303	+
GWHAAZE00000005	exon	17248440	17248504	+
GWHAAZE00000005	exon	17248608	17248673	+
GWHAAZE00000005	exon	17251212	17251305	+
GWHAAZE00000005	exon	17251876	17251912	+
GWHAAZE00000005	exon	17252061	17252118	+
GWHAAZE00000005	exon	17252217	17252432	+
GWHAAZE00000005	exon	17252548	17252615	+
GWHAAZE00000005	exon	17252770	17252836	+
GWHAAZE00000005	exon	17252962	17253126	+
GWHAAZE00000005	CDS	17222751	17222885	+
GWHAAZE00000005	CDS	17224114	17224230	+
GWHAAZE00000005	CDS	17224886	17225039	+
GWHAAZE00000005	CDS	17226494	17226741	+
GWHAAZE00000005	CDS	17226895	17227074	+
GWHAAZE00000005	CDS	17227671	17227747	+
GWHAAZE00000005	CDS	17227857	17227981	+
GWHAAZE00000005	CDS	17228995	17229149	+
GWHAAZE00000005	CDS	17229898	17229993	+
GWHAAZE00000005	CDS	17230085	17230231	+
GWHAAZE00000005	CDS	17232008	17232106	+
GWHAAZE00000005	CDS	17233060	17233155	+
GWHAAZE00000005	CDS	17233468	17233575	+
GWHAAZE00000005	CDS	17234174	17234287	+
GWHAAZE00000005	CDS	17234456	17234539	+
GWHAAZE00000005	CDS	17238160	17238288	+
GWHAAZE00000005	CDS	17238978	17239176	+
GWHAAZE00000005	CDS	17239382	17239586	+
GWHAAZE00000005	CDS	17240176	17240219	+
GWHAAZE00000005	CDS	17245180	17245310	+
GWHAAZE00000005	CDS	17245506	17245574	+
GWHAAZE00000005	CDS	17246820	17246909	+
GWHAAZE00000005	CDS	17247477	17247626	+
GWHAAZE00000005	CDS	17247936	17248001	+
GWHAAZE00000005	CDS	17248159	17248303	+
GWHAAZE00000005	CDS	17248440	17248504	+
GWHAAZE00000005	CDS	17248608	17248673	+
GWHAAZE00000005	CDS	17251212	17251305	+
GWHAAZE00000005	CDS	17251876	17251912	+
GWHAAZE00000005	CDS	17252061	17252118	+
GWHAAZE00000005	CDS	17252217	17252432	+
GWHAAZE00000005	CDS	17252548	17252615	+
GWHAAZE00000005	CDS	17252770	17252836	+
GWHAAZE00000005	CDS	17252962	17253126	+

Transcript Sequence
>GWHTAAZE018289 ATGAAATTTGCAACTTGTTCCTCTATGCTTATTAGGGAAAGGCATTCTAAAGATTACTGTGCAATGTATGATATATGTGGAGAACGAAGCGATGGGAAAGTTTTGAATTGCCCTTATGGTTCCCCTGCTGTGAAGGCTATTCCTTTCCTTGTAGGTTGCCCGGCATGCTTAAGGAACTTTTTGAACCTTTTCTGTGAGCTTTCTTGCTCCCCGGACCAGAGTCTATTTATCAATGTGACTTCTGCTTCCGAGAAACTGAATGGAAACCTGACTGTGGATGCAATTGACTTTTTTGTGGCTGATACTTTCGGAGAAGGTTTATTTGATTCCTGCAAGGAGGTGAAGTTTGGCACTATGAATACACGGGCCATAGAATTCGTTGGTGCGGGTGCCAAAAATTTTAAAGAGTGGTTTGCATTTATTGGTCAGCAAGCAGCCCCTGGTTTGCCTGGTTCACCATATACGATCAATTTCCAGTCAAGTGCTCCAGAGTCATCTGGAATGGAGGTTATGAATGCTTCTATTTATTCTTGCGGTGACACTTCTCTTGGCTGCTCCTGTGGCGACTGTCCTTCCTCTCCTTTATGTTCCAATTCAGAACCTCCTCCTCCTCACAAAGATGTTTCTTGCTCCATCGGAATTGGGTCTTTTAAGGTCAAGTGTGTTGACTTTTCATTGGCAATATTGTACGTTATTTTATTTTCTGCACTTCTTGGATGGGCTTTGTTTCACCGGACCGGAGAAAGGAGATCTTCATCTAGCACCAAACCATTGTTGGATTACAGTGATAATGGTGATATCAATTATGATGATGTGCTGAGGGATGAAATGAAGATGCAGAAAATGGTTCCTCGAATGGGAAATGAAGTCCAAATTTCTATTGTTCAGCGGCATATGTCAAGTTTTTTCAGGATGTATGGTTCGTGGGTTGCTAGAAATCCCGCTTTTGTTTTATTTTCATCATTGGCAGTCGTTCTTGTACTTAGTTTAGGTCTCATCCGTTTTGAAGTGGAGACAAGGCCTGAGAAGGTATTACTCATTACTGGAATTATAATTGTGCAGCTTTGGGTAGGTGATGATAGTAAGGCAGCAGAAGAGAAGCATTATTTTGACAGTCACCTGGCTCCTTTTTACAGGATTGAACAGGTGTTAACATTGTCCCTCTTGCTTCTCTCTCTTTATTTCCAGTTTCTCATATTAGCAACGATTCCAGATTCAAGGCATGGCAAATCACCCAGTATTGTAACAGATGATAATATCCAGTTACTCTTTGAAATACAACAGAAGGTTGATGATCTTCGTGCAAATTATTCGGGCGCTTTGATATCTTTGACTGATATATGCTTGAAGCCGCTTGATGAGGATTGTGCCACCCAAAGTGTTCTGCAGGTTGTCTCGAATTTCCTTATTTCTATATCTTGTTGCCCTGGGGTGAATTGTGCCTTTGACAATATTTCAAAATGGATCCAGAAAATTATGACGATTATGGGGGAGTTGATCATGCTGAATACTGCTTCCAGGTGCGCTTTGATGCATTACACTTCTGCAGACACATGTTTGAGTGCATTTCAAGCTCCCCTTGATCCGAGCACTGCTTTGGGGGGATTTCCTGGAAACAATTATTCCGAGGCTTCTGCATTTATTGTGACCTATCCAGTAAATAATGCAGTCAGTGAGGTTGGCGATGAAAATGGGAAGGCAGTGGCTTGGGAAAAAGCTTTCATACAGTTAGTGAAGGACGAGCTGCTTCCGATGGTGCAATCTAGTAATCTCACTCTTTCATTTTCATCTGAAAGCTCGATTGAGGAGGAGCTGAAAAGGGAAAGTACAGCTGATGTTATAACAATATTAGTAAGTTATCTTGTAATGTTTGCTTACATCTCGGTGACCTTGGGAGATGCACCACGTTTCTCTACGTTCTACCTTTCAACCAAGGTACTACTTGGCCTTTCAGGTGTTCTGGTTGTTATGCTCTCTGTCCTCGGATCCGTTGGATTTTTTAGTGCTATGGGAGTCAAGTCTACATTAATCATAATGGAAGTCATCCCATTCCTAGTTTTGGCTGTTGGAGTGGATAACATGTGTATACTGGTAAATGCTGTGAAACGGCAAGCACGGGTGCTGTCTCTAGAAGAGCGAATAAGCAATGCACTAGTTGAAGTTGGTCCTTCAATAACACTTGCTAGCTTATCTGAAGTTCTAGCATTTGCTGTTGGGGGTTTCATCTCTATGCCAGCATGCCGTGTCTTCTCCATGTTTGCAGCTTTGGCTGTCCTGCTGGACTTCCTTCTGCAAGTTACTGCTTTTGTCTCTCTAATAGTTTTTGACATTATGAGAGCTGAGGATAACAGGGTTGACTGTTTTCCGTGCATAAAAGTTTCCTCATCTTCTGAGGAAGATGACGAAGGTATTCGTATATTCTTTATCTCGCTTTTCTTTTGGTTTGCATCTTCTATATTTTTCAAGAAGCATCAACCAGGGGAGTCCCGGATTGCTCAGTCAATATATGGAGAAGGTGGCATTCCTGATATGATTTTTCGTTTTATTTCCATCTTGCAGAAAATTCATGCCCGCATTCTTGGTCTATGGGGAGTTAAAATTGTTGTTGTTGCTGTTTTTGTTGCATTTTGTTTGGCTAGCATTGCATTATCTACGAGGATTGAACCTGGTCTGGAGCAACAGATTGCTCTCCCTCGAGATTCATATCTTCAGTTGAATGGCCTTTTACGCAGCTCTGAATCAAGGCATACAAACCAGTTGTGTTCTATCAGCCAGTGTGACCCGAACTCTCTTTTGAATGAGATTTCGAAAGCGTCTTTGACTCCTGAGACTAGCTACATTGCAAAGCCAGCCGCCTCATGGCTTGATGACTTTCTTGTGTGGCTTTCACCTGAGGCTTTTGGTTGTTGTCGAAAGTTCGTGAATGGCAGTTATTGCCCCCCCGATGATCAGCCTCCTTGCTGCTCACCTGATGAAGGTTCTTGTGGCCTTGGTGGTGTTTGCAAAGATTGTACAACTTGCTTCCGTCACTCGGATCTCAATAACGACCGTCCATCTACAGAACAATTCAGGGAGAAGCTGCCATGGTTCCTCGATGCACTTCCCTCTGCTGATTGTGCTAAGGGTGGCCATGGGGCATACACAAGCAGTGTAGATCTTAATGGCTACAAAAGTGGGGTTATACAAGCGTCAGAGTTTCGTACATATCACACACCGCTAAACAAACAAAGTGACTATGTGAATTCAATCCGCGCTGCCCGAGAATTCTGTTCAAGGGTTTCCAGTTCGTTGAAGATTGAGGTGTTTCCATACTCAGTGTTCTATATTTTCTTTGAGCAATACCTGGATATATGGAGGACCGCTCTGATCAACATTGCAATAGCGCTTGGTGCTGTATTCATTGTTTGTGTGGTTATCACTTCCAGTTTATGGAGTTCAGCAATCACTGTATTAGTCGTGGCCATGATTGTTGTTGATCTCATGTTTGTTGTGGGTTTGGGTGGCATAGGAGGGAGGGGAACGGCAGAATCATTTCAGCATATTTTAGGGAAAAGGATGTTGAGTTTTGTTAACAATGAAATTCTGCAGGGTGTGATGGCGATATTGAATATACAGTTGAATGCTGTCTCTGTGGTGAATCTGATCATGTCAATAGGGATCGCAGTTGAGTTCTGCGTGCACATATCACATGCCTTCTCGGTAAGCCAAGGGAATAGGGAACAAAGAATGAAAGAGGCGTTGCGTACCATGGGTTCTTCTGTCTTCAGTGGAATTACGCTTACAAAGCTTGTTGGAGTTATTGTCCTCTGCTTTGCAAAATCCGAAATTTTTGTGGTTTATTACTTCCAAATATACCTTGCTTTGGTTCTGATTGGATTCTTGCACGGGCTTGTCTTTTTGCCGGTAAGTCAATCAAGTTCTCCATTCCTTCCCCCTATCCACACACGAAGGAAAAAGGAAAAAGACAACAAACCAACCAAAAAGAGAGGAAAACACTAA

Network for GWHGAAZE018267

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16414.6	NPC1_N	46	213	1.70E-47
PF12349.9	Sterol-sensing	643	792	1.70E-46
PF02460.19	Patched	1196	1302	1.40E-20

Protein Sequence

>GWHPAAZE018278
MKFATCSSMLIRERHSKDYCAMYDICGERSDGKVLNCPYGSPAVKAIPFLVGCPACLRNFLNLFCELSCSPDQSLFINVTSASEKLNGNLTVDAIDFFVADTFGEGLFDSCKEVKFGTMNTRAIEFVGAGAKNFKEWFAFIGQQAAPGLPGSPYTINFQSSAPESSGMEVMNASIYSCGDTSLGCSCGDCPSSPLCSNSEPPPPHKDVSCSIGIGSFKVKCVDFSLAILYVILFSALLGWALFHRTGERRSSSSTKPLLDYSDNGDINYDDVLRDEMKMQKMVPRMGNEVQISIVQRHMSSFFRMYGSWVARNPAFVLFSSLAVVLVLSLGLIRFEVETRPEKVLLITGIIIVQLWVGDDSKAAEEKHYFDSHLAPFYRIEQVLTLSLLLLSLYFQFLILATIPDSRHGKSPSIVTDDNIQLLFEIQQKVDDLRANYSGALISLTDICLKPLDEDCATQSVLQVVSNFLISISCCPGVNCAFDNISKWIQKIMTIMGELIMLNTASRCALMHYTSADTCLSAFQAPLDPSTALGGFPGNNYSEASAFIVTYPVNNAVSEVGDENGKAVAWEKAFIQLVKDELLPMVQSSNLTLSFSSESSIEEELKRESTADVITILVSYLVMFAYISVTLGDAPRFSTFYLSTKVLLGLSGVLVVMLSVLGSVGFFSAMGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQARVLSLEERISNALVEVGPSITLASLSEVLAFAVGGFISMPACRVFSMFAALAVLLDFLLQVTAFVSLIVFDIMRAEDNRVDCFPCIKVSSSSEEDDEGIRIFFISLFFWFASSIFFKKHQPGESRIAQSIYGEGGIPDMIFRFISILQKIHARILGLWGVKIVVVAVFVAFCLASIALSTRIEPGLEQQIALPRDSYLQLNGLLRSSESRHTNQLCSISQCDPNSLLNEISKASLTPETSYIAKPAASWLDDFLVWLSPEAFGCCRKFVNGSYCPPDDQPPCCSPDEGSCGLGGVCKDCTTCFRHSDLNNDRPSTEQFREKLPWFLDALPSADCAKGGHGAYTSSVDLNGYKSGVIQASEFRTYHTPLNKQSDYVNSIRAAREFCSRVSSSLKIEVFPYSVFYIFFEQYLDIWRTALINIAIALGAVFIVCVVITSSLWSSAITVLVVAMIVVDLMFVVGLGGIGGRGTAESFQHILGKRMLSFVNNEILQGVMAILNIQLNAVSVVNLIMSIGIAVEFCVHISHAFSVSQGNREQRMKEALRTMGSSVFSGITLTKLVGVIVLCFAKSEIFVVYYFQIYLALVLIGFLHGLVFLPVSQSSSPFLPPIHTRRKKEKDNKPTKKRGKH

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12385	NPC1	Lysosome	map04142
K12385	NPC1	Cholesterol metabolism	map04979

Gene Ontology

GO term	Ontology	Name
GO:0016021	cellular_component	integral component of membrane
GO:0005319	molecular_function	lipid transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.295
	SRR3591706	second leaf	25.965
	SRR3591707	mature leaf	33.951
	SRR3591708	Shoot apex	20.945
	SRR3591709	Stem	50.031
	SRR3591710	White floral bud	43.371
	SRR3591711	White flower	50.120
	SRR3591712	Green floral bud	23.086
	SRR3591713	Yellow flower	58.823
SRP173429	SRR8316895	Juvenile bud stage	13.833
	SRR8316896	Juvenile bud stage	17.839
	SRR8316897	Juvenile bud stage	11.383
	SRR8316894	Third green stage	7.663
	SRR8316900	Third green stage	15.837
	SRR8316901	Third green stage	15.299
	SRR8316898	Complete white stage	8.774
	SRR8316899	Complete white stage	22.016
	SRR8316903	Complete white stage	20.576
	SRR8316902	Silver flowering stage	14.887
	SRR8316904	Silver flowering stage	24.738
	SRR8316905	Silver flowering stage	12.265
	SRR8316906	Gold flowering stage	46.848
	SRR8316907	Gold flowering stage	37.904
	SRR8316908	Gold flowering stage	67.198
SRP132670	SRR6706286	Control	11.577
	SRR6706287	Light intensity 50%	12.978
	SRR6706288	Light intensity 20%	13.994
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.034
	CNS0095593	Slightly white alabastrum(diploid) 2	9.453
	CNS0095594	Slightly white alabastrum(diploid) 3	9.172
	CNS0095595	Whole white alabastrum(diploid) 2	8.945
	CNS0095596	Whole white alabastrum(diploid) 3	7.103
	CNS0095597	Whole white alabastrum(diploid) 4	9.017
	CNS0095598	Silvery flower (diploied) 1	22.310
	CNS0095599	Silvery flower (diploied) 2	15.284
	CNS0095600	Silvery flower (diploied) 3	27.900
	CNS0095601	Golden flower (diploid) 1	19.182
	CNS0095602	Golden flower (diploid) 2	32.731
	CNS0095603	Golden flower (diploid) 3	31.939
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.924
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.657
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.800
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.458
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.459
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.975
	CNS0095610	Silvery flower (tetraploid) 1	52.047
	CNS0095611	Silvery flower (tetraploid) 2	54.031
	CNS0095612	Silvery flower (tetraploid) 3	47.428
	CNS0095613	Golden flower (tetraploid) 1	27.521
	CNS0095614	Golden flower (tetraploid) 2	51.895
	CNS0095615	Golden flower (tetraploid) 3	60.423
CRA001975	CRR073297	Stem 1	15.203
	CRR073298	Stem 2	12.829
	CRR073299	Stem 3	7.264
	CRR073300	Leaf 1	15.876
	CRR073301	Leaf 2	15.099
	CRR073302	Leaf 3	10.430
	CRR073303	Juvenile bud 1	13.400
	CRR073304	Juvenile bud 2	8.578
	CRR073305	Juvenile bud 3	16.117
	CRR073306	Third green 1	9.087
	CRR073307	Third green 2	7.882
	CRR073308	Third green 3	9.686
	CRR073309	Second white 1	8.656
	CRR073310	Second white 2	11.810
	CRR073311	Second white 3	14.919
	CRR073312	Silver flowering 1	10.164
	CRR073313	Silver flowering 2	7.841
	CRR073314	Silver flowering 3	10.264
	CRR073315	Gold flowering 1	5.398
	CRR073316	Gold flowering 2	9.609
	CRR073317	Gold flowering 3	3.844
	CRR073318	Tawny withering 1	15.023
	CRR073319	Tawny withering 2	16.612
	CRR073320	Tawny withering 3	13.168