Gene detail

Detail information of GWHGAAZE018268

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004231096.1	0	PREDICTED: protein NLP2 [Solanum lycopersicum]
Swissprot	tr\|Q9SFW8\|NLP5_ARATH	1E-177	Protein NLP5
trEMBL	tr\|K4B480\|K4B480_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g112190.2.1}
TAIR10	AT1G76350.1	1E-147	Plant regulator RWP-RK family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	17254449	17257646	-
GWHAAZE00000005	mRNA	17254449	17257646	-
GWHAAZE00000005	exon	17256828	17257646	-
GWHAAZE00000005	exon	17256367	17256414	-
GWHAAZE00000005	exon	17255276	17256095	-
GWHAAZE00000005	exon	17254449	17255104	-
GWHAAZE00000005	CDS	17256828	17257646	-
GWHAAZE00000005	CDS	17256367	17256414	-
GWHAAZE00000005	CDS	17255276	17256095	-
GWHAAZE00000005	CDS	17254449	17255104	-

Transcript Sequence
>GWHTAAZE018290 ATGGATTTCAATCCCATGAATGAGCTCTTGGATGACGGATATTGGTTAGATTCTACATATGGATCCAATTTCTGGCACCCGAGTCTCTCGAATTCAAGCCCATCAAATTTCTCTTCAACTTATCTCCCTTCCTCAGATATTTACACGGACAACTCTGACTCAATCCCAAATCAGATAAAAATGGAGGAAGGAATAATAAGATCGAACTCCGCTGAAGGCCCACCTCTCCTTTATCCTGGCCAAATAGAAGTTCTTGATCACAACTGGGAAACCATACTAGCTGCGACTGAAATGAGCCAAAGATTGTGGACAGAACCAAGTAGTGAAAACCCATGTCTAATTACCTCCACTAACAAGAGATTAGAGCACGCATTTGAGTACTTAAAAGAGTCCACAAGATCAGGCAGAGATGTCCTTTTTCAGATATGGGTGCCGATGACTAGAGAAGGCAAACACGTCCTTATCACTAACAACCAACCGTTCTCCCTTAACCCGAGCTGCAAGAATCTTGCAGATTACAGAGATGTTTCAAGAAGCTACCAATTTGTAGCCGAGGAGTACTCGAACGAGTTTGAAGGGCTACCTGGCCGGGTTTTCTTGAAGAAGTTGCCTGAGTGGACTCCTCACTTTCCCCTTCTCAAAGGGGAAGAAGAGCATCCGAGTTCCAGTTTCTGCATGCAGTACAATGTTAGTGGGTCCCTTGGAGTTCCGGTTTTTGAACAAGGGAGTGGCACTTGCTTGGGGGTTGTCGAGATTGTGACAACTACTCAGAAAGTTAATTGTCGCCCCGAACTTGAGAACCTCTACAGAGCTCTTGAGGCTGTTGATCTAAGAAGCTCTAAATGCTTGTGTCCTCCCAAAGTAAAGGCCAGTGATAAATCTTACGAAGCCGTTTTGGCAGAGATTCAATATGTCATGAAATCTGTATGTGACTCGCATAAATTTCCTCTAGCTCAGACTTGGGCCCCGTGTACTCAAAATGGGTCCCGAAACTTCGATGGGACCTATTCTGCTTGTGTTTCAATCATCGATTCTGCTTCCTATGTGCCCGATGAACAGTTTTTGGGCTTTCACGAGGCGTGCTGTAAGCACCCCTTGCTGAGAGGCGAAGGTGTTCCTGGGGAAGCATTTTTGACGAATAAACTATGCTTTGCTGCTGACATTAGGGATTTTTGCGAGGACGAATATCCTCTCTCTCACCATGCCAAGGTCTTTGAACTGCGTGCTGCTGCAGCAATACACCTTAGGAGTGTCTACACTGAATCAGCCGATTTTGTGTTGGAATTTTTCTTGCCACTTGATTGTAAAGATAGTGAAGACCAAGAACAGATGCTGAGCTTGTTAGCATTAGCAATACAAGAATATTCCCGAAGTTTACGGATCGTTACAGAACAGGAGCTAGCTGAAGAAAGTGGATTCCCAGTAAGAGAAATGGATGGCCCTTTAGGTGGTAGACCGGATGAAGAAGGCACACGAAAGTTAGTGTCTTCTTCTCCTACTCGAGATGAAGATCTCGAGGCGACAACCCATTGGAATAAAGGCAAGATAGAGTTGCAACATGAGTCCACATATCTGAAGCATGAGAAGAATCGGAAGAGACGAATCAAATCAGAGGGGGATGTCAGTTTGCATGTACTTAGGCAACATTTTTCCGGGAGCCTTAAAGATGCTGCTAAGAGTATTGGCGTGTGCCCCACTACTTTGAAAAGTATTTGCAGGAAACATGGCATCACAAGATGGCCTTCTCGGAAGATCAAGAAGATAGGCGATTCGTTAAGGAAAATCCAACTTGTAATTGATTCGGTCCAAGGCATTGATGCTGCTATTTCACTCGGTTCTTTTGACAACAGTTTCCCAGAACTAAGTTCTCCAAACTTACCCATCATGAATTCCTCCTTGAAGTCAAATCCAAACAATCATTTTGAGCAATTAAACACTCAACCTTCCTCCTCTAGCAGCTATGGCTGCACTTCAAATTTCTGTTGTTCTACGGGAGCAAAGCAGCTCTCTCAAGGGGCTCTACCTCCCTTACCAAAATGTAGCAACCGGATTTTACTGAATGGGGATGCTTTTCGAGTGAAAGCCACTTTTGGGGAAAGGAAGATCTGGTTCACCATGCTACAAAATTGGTCGTTCAAAGATTTACAGGGGGGGATAATTAGGCGTTTTAATATAGATGAGGTTAGTAAAATCAGACTGAAGTATTTGGACGATGATTGTGAATGGATTCTCTTGATGTCTGATGCTGATCTCGAGGAATGTATAGACCTACACAGATGTTCAAGCAGCCGCATAATTAGACTCTCCGTCTACCAGACATTTTTCGAAATGCCACAACCTTAG

Network for GWHGAAZE018268

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02042.16	RWP-RK	541	588	6.60E-24
PF00564.25	PB1	691	771	1.10E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	RWP-RK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.225
	SRR3591706	second leaf	1.920
	SRR3591707	mature leaf	1.860
	SRR3591708	Shoot apex	3.328
	SRR3591709	Stem	3.409
	SRR3591710	White floral bud	2.245
	SRR3591711	White flower	2.443
	SRR3591712	Green floral bud	2.610
	SRR3591713	Yellow flower	2.060
SRP173429	SRR8316895	Juvenile bud stage	1.738
	SRR8316896	Juvenile bud stage	2.649
	SRR8316897	Juvenile bud stage	1.047
	SRR8316894	Third green stage	1.549
	SRR8316900	Third green stage	3.446
	SRR8316901	Third green stage	2.732
	SRR8316898	Complete white stage	0.547
	SRR8316899	Complete white stage	4.671
	SRR8316903	Complete white stage	1.913
	SRR8316902	Silver flowering stage	1.032
	SRR8316904	Silver flowering stage	1.533
	SRR8316905	Silver flowering stage	0.772
	SRR8316906	Gold flowering stage	2.488
	SRR8316907	Gold flowering stage	2.683
	SRR8316908	Gold flowering stage	1.922
SRP132670	SRR6706286	Control	1.293
	SRR6706287	Light intensity 50%	2.015
	SRR6706288	Light intensity 20%	1.846
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.005
	CNS0095593	Slightly white alabastrum(diploid) 2	3.401
	CNS0095594	Slightly white alabastrum(diploid) 3	2.270
	CNS0095595	Whole white alabastrum(diploid) 2	2.125
	CNS0095596	Whole white alabastrum(diploid) 3	1.952
	CNS0095597	Whole white alabastrum(diploid) 4	1.900
	CNS0095598	Silvery flower (diploied) 1	3.662
	CNS0095599	Silvery flower (diploied) 2	2.015
	CNS0095600	Silvery flower (diploied) 3	3.057
	CNS0095601	Golden flower (diploid) 1	2.836
	CNS0095602	Golden flower (diploid) 2	3.979
	CNS0095603	Golden flower (diploid) 3	3.458
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.010
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.741
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.239
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.174
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.217
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.857
	CNS0095610	Silvery flower (tetraploid) 1	3.920
	CNS0095611	Silvery flower (tetraploid) 2	4.755
	CNS0095612	Silvery flower (tetraploid) 3	4.524
	CNS0095613	Golden flower (tetraploid) 1	1.948
	CNS0095614	Golden flower (tetraploid) 2	3.290
	CNS0095615	Golden flower (tetraploid) 3	1.795
CRA001975	CRR073297	Stem 1	3.544
	CRR073298	Stem 2	3.113
	CRR073299	Stem 3	3.517
	CRR073300	Leaf 1	3.595
	CRR073301	Leaf 2	3.668
	CRR073302	Leaf 3	2.296
	CRR073303	Juvenile bud 1	2.288
	CRR073304	Juvenile bud 2	1.715
	CRR073305	Juvenile bud 3	3.952
	CRR073306	Third green 1	1.229
	CRR073307	Third green 2	0.685
	CRR073308	Third green 3	1.061
	CRR073309	Second white 1	1.206
	CRR073310	Second white 2	2.251
	CRR073311	Second white 3	1.978
	CRR073312	Silver flowering 1	2.311
	CRR073313	Silver flowering 2	1.173
	CRR073314	Silver flowering 3	1.302
	CRR073315	Gold flowering 1	0.913
	CRR073316	Gold flowering 2	2.762
	CRR073317	Gold flowering 3	1.185
	CRR073318	Tawny withering 1	2.102
	CRR073319	Tawny withering 2	3.651
	CRR073320	Tawny withering 3	2.898