Gene detail

Detail information of GWHGAAZE018289

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011092951.1	9.1417E-177	PREDICTED: heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [Sesamum indicum]
Swissprot	tr\|Q39108\|GGR_ARATH	8E-132	Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic (Precursor)
trEMBL	tr\|B9H1M5\|B9H1M5_POPTR	4E-175	Uncharacterized protein {ECO:0000313\|EMBL:EEE86718.2}
TAIR10	AT4G38460.1	2E-98	geranylgeranyl reductase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	17489666	17495590	+
GWHAAZE00000005	mRNA	17489666	17495590	+
GWHAAZE00000005	exon	17489666	17489998	+
GWHAAZE00000005	exon	17494919	17495590	+
GWHAAZE00000005	CDS	17489666	17489998	+
GWHAAZE00000005	CDS	17494919	17495590	+

Transcript Sequence
>GWHTAAZE018311 ATGGTTTTCGGATTGATTATAACATCATCTCCACATCTCTCCTTCCGTAAGAACCGCCTCCCGTTATCTCCACGAACTATTTACTGTTCTTCGTTGCGAATATCGTCAAAGTTCGATCTGAAAACGTACTGGAAAACTCTGATAACAGAAATAGACGAGAAGCTGGACCAGGCGATTCAAATTCAGTACCCTCAACAGATGTATGAGGCTATGCGTTACTCTGTTTTAGCTACTGGAGCTAAAAGAGCTCCTCCGGTTATGTGTGTTGCTGCCTGCGAGCTCTTCGGCGGCAACCGCCTCGCCGCCTTCCCCACCGCCTGCGCCCTTGAAATGGTCCATGCCGCTTCACTGATACACGACGACTTACCATGCATGGACGACAACCCATCTCGTCGTGGTGAGCCCTCTAACCACACCATATTCGGCATTGACATGGCAATCCTAGCCGGAGACGCCTTATTCCCACTCGGATTCAGCCACATTGTATCCCAAACACCCCCTGACCTGGTCCCTGTGCCTCGCCTTCTCCGTGTTGTCACCGAGATCGCCCAAGCTGTGGGGTCTACTGGCATGGCGGCTGGCCAGCTCCTTGACCTTGACGACTGGCCCACCTCCGTAGAATTGGTCCAAGAAAAGAAGTACGGCCAGATGGGCGAATGCTCTGCTGTGTGTGGAGGTCTATTAGCCGGCGCTGCGGATGAGGAGATCCAACGGCTGAGGAGGTACGGGAGAGCGGTTGGGGTTTTGTATCAGGTGGTTGATGATTTGTTTGAAGAGAAAATGAAAGGGAAAGATGGTGATGGGAAGAGAGGGAAGGGGAAGAGTTATGCGGGAGTGTATGGGGTGGAGAAGGCTATGGAAGTGGCCAAGGAACTTGGAGTCAAGGCTAAGAGAGAGTTGGATGGTTTTGAAAAGTATGGGGAGAAGGTGGAGCCTTTGTACAGTTTTGTAGATTATGCTTCTGATAGAGGTTTTAGTGTGGGTGATCATGATGATCAAGATTGA

Network for GWHGAAZE018289

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00348.18	polyprenyl_synt	66	259	4.20E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13789	GGPS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Terpenoid backbone biosynthesis	map00900

Gene Ontology

GO term	Ontology	Name
GO:0008299	biological_process	isoprenoid biosynthetic process

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.238
	SRR3591707	mature leaf	0.036
	SRR3591708	Shoot apex	0.216
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	7.973
	SRR3591711	White flower	0.380
	SRR3591712	Green floral bud	2.112
	SRR3591713	Yellow flower	1.131
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.270
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.166
	SRR8316900	Third green stage	0.513
	SRR8316901	Third green stage	0.747
	SRR8316898	Complete white stage	1.899
	SRR8316899	Complete white stage	3.041
	SRR8316903	Complete white stage	1.981
	SRR8316902	Silver flowering stage	0.326
	SRR8316904	Silver flowering stage	0.357
	SRR8316905	Silver flowering stage	0.196
	SRR8316906	Gold flowering stage	0.746
	SRR8316907	Gold flowering stage	0.257
	SRR8316908	Gold flowering stage	2.779
SRP132670	SRR6706286	Control	2.489
	SRR6706287	Light intensity 50%	1.884
	SRR6706288	Light intensity 20%	1.136
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.003
	CNS0095593	Slightly white alabastrum(diploid) 2	0.190
	CNS0095594	Slightly white alabastrum(diploid) 3	0.444
	CNS0095595	Whole white alabastrum(diploid) 2	0.365
	CNS0095596	Whole white alabastrum(diploid) 3	0.375
	CNS0095597	Whole white alabastrum(diploid) 4	0.930
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.301
	CNS0095600	Silvery flower (diploied) 3	1.471
	CNS0095601	Golden flower (diploid) 1	0.373
	CNS0095602	Golden flower (diploid) 2	0.207
	CNS0095603	Golden flower (diploid) 3	0.633
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.440
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.053
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.606
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.252
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.182
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.433
	CNS0095610	Silvery flower (tetraploid) 1	2.497
	CNS0095611	Silvery flower (tetraploid) 2	1.158
	CNS0095612	Silvery flower (tetraploid) 3	5.997
	CNS0095613	Golden flower (tetraploid) 1	0.274
	CNS0095614	Golden flower (tetraploid) 2	2.342
	CNS0095615	Golden flower (tetraploid) 3	0.156
CRA001975	CRR073297	Stem 1	0.155
	CRR073298	Stem 2	0.513
	CRR073299	Stem 3	0.273
	CRR073300	Leaf 1	0.672
	CRR073301	Leaf 2	1.020
	CRR073302	Leaf 3	1.457
	CRR073303	Juvenile bud 1	1.013
	CRR073304	Juvenile bud 2	2.339
	CRR073305	Juvenile bud 3	1.702
	CRR073306	Third green 1	1.182
	CRR073307	Third green 2	1.079
	CRR073308	Third green 3	0.968
	CRR073309	Second white 1	0.039
	CRR073310	Second white 2	0.426
	CRR073311	Second white 3	0.523
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.062
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.227
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.051