Gene detail

Detail information of GWHGAAZE018290

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010102652.1	F-box/LRR-repeat protein 10 [Morus notabilis]
Swissprot	tr\|Q9SDA8\|FBL10_ARATH	F-box/LRR-repeat protein 10
trEMBL	tr\|W9RJ87\|W9RJ87_9ROSA	F-box/LRR-repeat protein 10 {ECO:0000313\|EMBL:EXB93814.1}
TAIR10	AT2G17020.1	F-box/RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	17501433	17509282	+
GWHAAZE00000005	mRNA	17501433	17509282	+
GWHAAZE00000005	exon	17501433	17501612	+
GWHAAZE00000005	exon	17501700	17501905	+
GWHAAZE00000005	exon	17502116	17502209	+
GWHAAZE00000005	exon	17507834	17509282	+
GWHAAZE00000005	CDS	17501433	17501612	+
GWHAAZE00000005	CDS	17501700	17501905	+
GWHAAZE00000005	CDS	17502116	17502209	+
GWHAAZE00000005	CDS	17507834	17509282	+

Transcript Sequence
>GWHTAAZE018312 ATGGCGGAAGAATCCTCCGAGACGAATCTCCAAAGCCTGGATCTTCTCCCGTCGGCTCTCCTTGCAACAATTATGACCAAGCTCGACGTTCCCTCCATCTGCTCCCTCGCATCCACTTGCAGAACCTTCAACACCTGCTCTTCTCAAATCCTCTCCTTCCTCCCCAACTTTCACCTCCTCGACATTGCGCCGTCCATGGACTTACTGATACCTTTGTTGCCTCCCAATCCTCACCTTCGAAGCCTCAAGGTTGATTGCAATCGGCTCGATGATTCCTCGATTGGTTATCTTCTTAGGCCTTCTTTGCACGAGCTCTCTCTACACAATTGCGCCGATTTTAGCGGAATGCTTCTCGCTGAGGTCGGTGGACGATGCAAAGACCTAAGGTCTCTATACTTGAGTTCAGTGGCTGATAAAAGAGGGCGGTCAATTCATGTATCTGATCTAGAGGAATTACTCAGTGGTTGCACACAGTTGGAAACTCTGATCCTGATGTTTGATGTCTCGATATTTCCGCGGCACAATTTTGCTCGCTTCTGGACCTTGGCATCTGCAAATCTTGCATATCTTGAGATTGGGTACATAGCTTCAGTAATGGTGACCGAATTGCTTACCCCATCTGTGGGACCCCATCAGCCACCAAATCATATTCAGCCACCTGTATTCCCGAGTATCAAGAAGTTGTGCCTTTCAGTAGATTACATTACTGACACTATGGTCAGTGCCATATCAAGAAGTCTCATCTCATTGACCCACTTGGATCTTCGAGATGCGCCCATTATCGAACCAACAGTTACGTTCGACCTCACTAATGCAGGCCTTCAACAGATAAATCAACATGGGAAACTGAAACACCTTTCCCTGATCCGTAGCCAAGAGTTTGTTGCTACGTACTTTAAGAGAGTTAATGATCTTGGTCTCCTTTTAATGGCTGACAGATGCTCAAGCATGGAAAGTATATGTCTCGGTGGCTTTTGTCGGGTTACGGATACAGGTTTCAAAACAATATTGCATTCTTGCTCTAGCTTATTTAAGCTTAGGGTATCTCATGGGACCCAACTAACTGATCTCATATTCCATGACATGCATGCCACCTCACTTTCTCTTACGCATGTTAGCCTAAGATGGTGTAATCTTATAACGAATCTAGCTGTCGTGCGATTGGCATCTAATGCAGATCTTACTGTTCTTGATTTGAGGGATTGTAGAAGCCTTGGAGATGAATCTCTTCGAGCCATCAGCTCTCTTTCTAAATTGAAGACTTTGCTTCTAGATGGCTCTGATATAAGTGACGTGGGATTGTCGTATTTGAAGAATCGTGTGATTAATTCACTTTCTTCATTATCTGTTAGAGGGTGCAAGAGACTTACAGACAAGTGCATTTCTTCTCTATTTGACGGCACTTGTAACCAAGAGTTACAAGAATTAGACCTATCAAATCTTCCTAACCTCTCCGACACCAGCGTGCTGCTACTCGCAAGGAGTCGGGTACATATCCTTGAACTTCGAATGCGACAATGTCCACTCATTGGTGACACGTCGGTGATGGCGTTAGCCTCAATGCAGGTTGATGAGGACAGGTGGCACGGAAGTAGATTGCGACTGTTGGATCTCTATAACTGCGGGGGAATTACTCAGCTTGCATTCCGGTGGTTAAGAAAGCCTTACTTTCCGAGGTTGAGATGGTTGGGAGTTACGGGTAGTGTGAACAGGGATATGGTAGATGCCTTAGCTAGAAGTAAACCGTTCTTGCACGTGGCTTTCCGTGGTGAAGAGCTGGGGACCGACCAATGGGATAACTCAGAAGATATGTACATGCATGACTATGAGGAAGTTGATGAGCTTGAGCAGTTGCTTCTTGAATACGACTATGAGAGTGATGATGAAGAAATGGAAGATGTTGAAATTGCTGCTGGGCTGCTCCAATGA

Network for GWHGAAZE018290

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	13	49	1.60E-05
PF13516.7	LRR_6	76	92	0.85
PF13516.7	LRR_6	391	414	0.031

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.821
	SRR3591706	second leaf	13.439
	SRR3591707	mature leaf	11.516
	SRR3591708	Shoot apex	19.312
	SRR3591709	Stem	16.647
	SRR3591710	White floral bud	24.034
	SRR3591711	White flower	20.967
	SRR3591712	Green floral bud	17.735
	SRR3591713	Yellow flower	18.230
SRP173429	SRR8316895	Juvenile bud stage	6.418
	SRR8316896	Juvenile bud stage	9.205
	SRR8316897	Juvenile bud stage	2.933
	SRR8316894	Third green stage	5.184
	SRR8316900	Third green stage	11.191
	SRR8316901	Third green stage	10.066
	SRR8316898	Complete white stage	5.838
	SRR8316899	Complete white stage	12.208
	SRR8316903	Complete white stage	13.675
	SRR8316902	Silver flowering stage	7.423
	SRR8316904	Silver flowering stage	11.927
	SRR8316905	Silver flowering stage	5.648
	SRR8316906	Gold flowering stage	17.139
	SRR8316907	Gold flowering stage	14.127
	SRR8316908	Gold flowering stage	16.230
SRP132670	SRR6706286	Control	9.933
	SRR6706287	Light intensity 50%	10.062
	SRR6706288	Light intensity 20%	10.110
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.746
	CNS0095593	Slightly white alabastrum(diploid) 2	12.031
	CNS0095594	Slightly white alabastrum(diploid) 3	7.019
	CNS0095595	Whole white alabastrum(diploid) 2	9.128
	CNS0095596	Whole white alabastrum(diploid) 3	8.628
	CNS0095597	Whole white alabastrum(diploid) 4	7.399
	CNS0095598	Silvery flower (diploied) 1	12.863
	CNS0095599	Silvery flower (diploied) 2	11.330
	CNS0095600	Silvery flower (diploied) 3	17.971
	CNS0095601	Golden flower (diploid) 1	12.125
	CNS0095602	Golden flower (diploid) 2	17.282
	CNS0095603	Golden flower (diploid) 3	18.699
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.756
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.672
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.853
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.519
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.315
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.103
	CNS0095610	Silvery flower (tetraploid) 1	15.675
	CNS0095611	Silvery flower (tetraploid) 2	17.688
	CNS0095612	Silvery flower (tetraploid) 3	23.139
	CNS0095613	Golden flower (tetraploid) 1	11.220
	CNS0095614	Golden flower (tetraploid) 2	14.776
	CNS0095615	Golden flower (tetraploid) 3	23.292
CRA001975	CRR073297	Stem 1	16.332
	CRR073298	Stem 2	16.477
	CRR073299	Stem 3	19.224
	CRR073300	Leaf 1	15.957
	CRR073301	Leaf 2	14.093
	CRR073302	Leaf 3	13.178
	CRR073303	Juvenile bud 1	13.930
	CRR073304	Juvenile bud 2	12.189
	CRR073305	Juvenile bud 3	13.835
	CRR073306	Third green 1	10.890
	CRR073307	Third green 2	8.085
	CRR073308	Third green 3	9.828
	CRR073309	Second white 1	7.467
	CRR073310	Second white 2	6.666
	CRR073311	Second white 3	8.913
	CRR073312	Silver flowering 1	8.626
	CRR073313	Silver flowering 2	7.552
	CRR073314	Silver flowering 3	8.206
	CRR073315	Gold flowering 1	10.299
	CRR073316	Gold flowering 2	12.229
	CRR073317	Gold flowering 3	12.905
	CRR073318	Tawny withering 1	15.433
	CRR073319	Tawny withering 2	13.622
	CRR073320	Tawny withering 3	9.594