Detail information of GWHGAAZE018295


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002278409.20PREDICTED: serine/threonine-protein kinase ATR isoform X2 [Vitis vinifera]
Swissprottr|Q9FKS4|ATR_ARATH0Serine/threonine-protein kinase ATR
trEMBLtr|F6I0X3|F6I0X3_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB60589.1}
TAIR10AT5G40820.10Ataxia telangiectasia-mutated and RAD3-related

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1755709417575606+
GWHAAZE00000005mRNA1755709417575606+
GWHAAZE00000005exon1755709417557253+
GWHAAZE00000005exon1755735817557502+
GWHAAZE00000005exon1755772317557764+
GWHAAZE00000005exon1755808317558195+
GWHAAZE00000005exon1755858317558911+
GWHAAZE00000005exon1755908817559212+
GWHAAZE00000005exon1756202117562165+
GWHAAZE00000005exon1756230117562876+
GWHAAZE00000005exon1756295317563028+
GWHAAZE00000005exon1756482317565138+
GWHAAZE00000005exon1756623817567497+
GWHAAZE00000005exon1756961417572980+
GWHAAZE00000005exon1757309417573654+
GWHAAZE00000005exon1757392417574547+
GWHAAZE00000005exon1757492317575117+
GWHAAZE00000005exon1757543917575606+
GWHAAZE00000005CDS1755709417557253+
GWHAAZE00000005CDS1755735817557502+
GWHAAZE00000005CDS1755772317557764+
GWHAAZE00000005CDS1755808317558195+
GWHAAZE00000005CDS1755858317558911+
GWHAAZE00000005CDS1755908817559212+
GWHAAZE00000005CDS1756202117562165+
GWHAAZE00000005CDS1756230117562876+
GWHAAZE00000005CDS1756295317563028+
GWHAAZE00000005CDS1756482317565138+
GWHAAZE00000005CDS1756623817567497+
GWHAAZE00000005CDS1756961417572980+
GWHAAZE00000005CDS1757309417573654+
GWHAAZE00000005CDS1757392417574547+
GWHAAZE00000005CDS1757492317575117+
GWHAAZE00000005CDS1757543917575606+
Transcript Sequence

Network for GWHGAAZE018295

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08064.14UME112012203.80E-15
PF02259.24FAT181521925.80E-49
PF00454.28PI3_PI4_kinase241726624.00E-47
PF02260.21FATC270227331.50E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K06640ATR Fanconi anemia pathway map03460
Cell cyclemap04110
Apoptosis - flymap04214
p53 signaling pathwaymap04115
Cellular senescencemap04218

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.955
SRR3591706second leaf1.895
SRR3591707mature leaf1.975
SRR3591708Shoot apex4.336
SRR3591709Stem1.781
SRR3591710White floral bud4.137
SRR3591711White flower4.479
SRR3591712Green floral bud3.385
SRR3591713Yellow flower2.613
SRP173429 SRR8316895Juvenile bud stage 1.983
SRR8316896Juvenile bud stage 2.777
SRR8316897Juvenile bud stage 1.137
SRR8316894Third green stage 1.503
SRR8316900Third green stage 3.107
SRR8316901Third green stage 2.401
SRR8316898Complete white stage 0.707
SRR8316899Complete white stage 1.711
SRR8316903Complete white stage 2.040
SRR8316902Silver flowering stage1.359
SRR8316904Silver flowering stage2.893
SRR8316905Silver flowering stage1.028
SRR8316906Gold flowering stage 2.888
SRR8316907Gold flowering stage 2.762
SRR8316908Gold flowering stage 1.973
SRP132670SRR6706286Control2.061
SRR6706287Light intensity 50%2.727
SRR6706288Light intensity 20%2.825
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.867
CNS0095593Slightly white alabastrum(diploid) 20.976
CNS0095594Slightly white alabastrum(diploid) 30.794
CNS0095595Whole white alabastrum(diploid) 21.306
CNS0095596Whole white alabastrum(diploid) 31.134
CNS0095597Whole white alabastrum(diploid) 40.993
CNS0095598Silvery flower (diploied) 11.226
CNS0095599Silvery flower (diploied) 21.083
CNS0095600Silvery flower (diploied) 34.126
CNS0095601Golden flower (diploid) 11.531
CNS0095602Golden flower (diploid) 23.958
CNS0095603Golden flower (diploid) 33.175
CNS0095604Slightly white alabastrum(tetraploid) 11.462
CNS0095605Slightly white alabastrum(tetraploid) 20.927
CNS0095606Slightly white alabastrum(tetraploid) 32.211
CNS0095607Whole white alabastrum(tetraploid) 10.703
CNS0095608Whole white alabastrum(tetraploid) 20.504
CNS0095609Whole white alabastrum(tetraploid) 31.893
CNS0095610Silvery flower (tetraploid) 11.722
CNS0095611Silvery flower (tetraploid) 22.550
CNS0095612Silvery flower (tetraploid) 32.043
CNS0095613Golden flower (tetraploid) 10.474
CNS0095614Golden flower (tetraploid) 21.320
CNS0095615Golden flower (tetraploid) 31.100
CRA001975CRR073297Stem 12.679
CRR073298Stem 22.301
CRR073299Stem 31.432
CRR073300Leaf 12.516
CRR073301Leaf 21.931
CRR073302Leaf 31.047
CRR073303Juvenile bud 11.209
CRR073304Juvenile bud 20.476
CRR073305Juvenile bud 32.214
CRR073306Third green 10.468
CRR073307Third green 20.198
CRR073308Third green 30.483
CRR073309Second white 10.227
CRR073310Second white 20.581
CRR073311Second white 30.896
CRR073312Silver flowering 10.522
CRR073313Silver flowering 20.844
CRR073314Silver flowering 30.525
CRR073315Gold flowering 10.631
CRR073316Gold flowering 21.425
CRR073317Gold flowering 30.532
CRR073318Tawny withering 11.055
CRR073319Tawny withering 21.281
CRR073320Tawny withering 31.307