Detail information of GWHGAAZE018296


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP14534.10unnamed protein product [Coffea canephora]
Swissprottr|Q8GWA9|PP157_ARATH6E-168Pentatricopeptide repeat-containing protein At2g17033
trEMBLtr|A0A068V1Z9|A0A068V1Z9_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_87 {ECO:0000313|EMBL:CDP14534.1}
TAIR10AT2G17033.11E-135pentatricopeptide (PPR) repeat-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1758756017589037-
GWHAAZE00000005mRNA1758756017589037-
GWHAAZE00000005exon1758756017588621-
GWHAAZE00000005exon1758874117589037-
GWHAAZE00000005CDS1758874117589037-
GWHAAZE00000005CDS1758756017588621-
Transcript Sequence

Network for GWHGAAZE018296

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01535.21PPR1942231.60E-05
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.163
SRR3591706second leaf5.247
SRR3591707mature leaf6.136
SRR3591708Shoot apex4.150
SRR3591709Stem7.631
SRR3591710White floral bud6.747
SRR3591711White flower12.102
SRR3591712Green floral bud4.575
SRR3591713Yellow flower6.495
SRP173429 SRR8316895Juvenile bud stage 4.606
SRR8316896Juvenile bud stage 4.771
SRR8316897Juvenile bud stage 2.140
SRR8316894Third green stage 2.449
SRR8316900Third green stage 6.585
SRR8316901Third green stage 4.816
SRR8316898Complete white stage 2.225
SRR8316899Complete white stage 6.314
SRR8316903Complete white stage 6.981
SRR8316902Silver flowering stage4.366
SRR8316904Silver flowering stage9.230
SRR8316905Silver flowering stage4.476
SRR8316906Gold flowering stage 8.644
SRR8316907Gold flowering stage 7.321
SRR8316908Gold flowering stage 6.829
SRP132670SRR6706286Control8.406
SRR6706287Light intensity 50%8.690
SRR6706288Light intensity 20%8.364
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.392
CNS0095593Slightly white alabastrum(diploid) 24.151
CNS0095594Slightly white alabastrum(diploid) 33.354
CNS0095595Whole white alabastrum(diploid) 23.307
CNS0095596Whole white alabastrum(diploid) 31.546
CNS0095597Whole white alabastrum(diploid) 42.234
CNS0095598Silvery flower (diploied) 16.792
CNS0095599Silvery flower (diploied) 26.538
CNS0095600Silvery flower (diploied) 314.196
CNS0095601Golden flower (diploid) 16.559
CNS0095602Golden flower (diploid) 212.643
CNS0095603Golden flower (diploid) 310.535
CNS0095604Slightly white alabastrum(tetraploid) 15.117
CNS0095605Slightly white alabastrum(tetraploid) 23.016
CNS0095606Slightly white alabastrum(tetraploid) 37.016
CNS0095607Whole white alabastrum(tetraploid) 12.281
CNS0095608Whole white alabastrum(tetraploid) 21.694
CNS0095609Whole white alabastrum(tetraploid) 34.647
CNS0095610Silvery flower (tetraploid) 19.992
CNS0095611Silvery flower (tetraploid) 211.752
CNS0095612Silvery flower (tetraploid) 316.085
CNS0095613Golden flower (tetraploid) 17.616
CNS0095614Golden flower (tetraploid) 28.820
CNS0095615Golden flower (tetraploid) 312.559
CRA001975CRR073297Stem 17.397
CRR073298Stem 27.120
CRR073299Stem 32.062
CRR073300Leaf 17.702
CRR073301Leaf 26.221
CRR073302Leaf 33.755
CRR073303Juvenile bud 12.266
CRR073304Juvenile bud 23.441
CRR073305Juvenile bud 35.049
CRR073306Third green 13.691
CRR073307Third green 22.197
CRR073308Third green 33.259
CRR073309Second white 12.811
CRR073310Second white 24.413
CRR073311Second white 34.028
CRR073312Silver flowering 13.649
CRR073313Silver flowering 23.014
CRR073314Silver flowering 33.790
CRR073315Gold flowering 11.989
CRR073316Gold flowering 25.366
CRR073317Gold flowering 32.439
CRR073318Tawny withering 12.744
CRR073319Tawny withering 23.787
CRR073320Tawny withering 32.774