Gene detail

Detail information of GWHGAAZE018297

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP33280.1	0	hypothetical protein JCGZ_13067 [Jatropha curcas]
trEMBL	tr\|A0A067KLY5\|A0A067KLY5_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP33280.1}
TAIR10	AT4G35140.1	2E-141	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	17594892	17596997	+
GWHAAZE00000005	mRNA	17594892	17596997	+
GWHAAZE00000005	exon	17594892	17595008	+
GWHAAZE00000005	exon	17595518	17595769	+
GWHAAZE00000005	exon	17595934	17596077	+
GWHAAZE00000005	exon	17596278	17596997	+
GWHAAZE00000005	CDS	17594892	17595008	+
GWHAAZE00000005	CDS	17595518	17595769	+
GWHAAZE00000005	CDS	17595934	17596077	+
GWHAAZE00000005	CDS	17596278	17596997	+

Transcript Sequence
>GWHTAAZE018319 ATGAGAAAGAAGGGGAGAACAAGCCTAGTCCTAGACGCGGCCATTGTCAACATTTGCCAACGAGAGGTCGGCCAACTATCCACCACAAGCTTTGCTCACCGTCTAGTCGCTTCCCAGGATCTTGTGGTTCGGCTTGATCTCTTTAGGAAGCTTGAAAAACACAAAGGTTGCGTGAACACTGTTAGCTTCAATTCAGATGGTGACATTCTTGTGTCGGGCTCCGATGACAGGAAGGTCATACTCTGGGAATGGGAAACTGGGGATATTAAGCTCTCATTCGAATCGGGCCATTGCAGCAACATTCTTCAGGCAAAAATTATGCCTTACACAAAGGATCAAAACATTGTTACCTGTGCTGCTGATGGGCAGGTGAGATACACTCAGATTCTAGAAGACGGGAAGGTGGAGACTAAATTGCTAGCAAAGCATCAAGGAAGAGCTCATAAGTTGGCCACTGAACCCGGAAGCTCCCATTCATTTTATACTTGCGGTGAAGATGGATTGGTTCAACATATTGATCTTAGAACTGAAGCTGCTACAGAACTCTTCGCTTGCCAGTCCATCCGAAACAGAATTTCCAAGCCACATATTAATCTGAATGCAATTGCAATAGACACAAGGAACCCTAATCTGATTGCAGTTGCAGGGTCCGATGAATATGTTAGAGTCTATGATATCCGCAAATATAAGTGGGACAGCTCGTCTGACTTTGGTGCACCAACTGACTGTTTTTGCCCCCAACATCTAATTGGTGATGAGCTAGTGGGAGTAACAGGATTGGCATACTCAGATCGAAGCGAGCTTCTTGCTTCTTACAACGACGAATTCATATATCTTTTCTCAAGGGATATGGGCTTAGGATCCAATCCAATGTTGACCTCTCCATTGGGCTTAGAATATGACATAAATGAAGCTCCTGATGTTAAAATGGGTCCGCAAGTTTACAAGGGGCATAGGAACCTTGAGACGGTGAAGGGTGTGAGCTTCTTTGGGCCTAAATGTGAGTATGTTGTGAGCGGTTCGGATTGTGGGTGCATGTTCATTTGGAAGAAGGGTGGGGAACTTGTTCGTGTAATGAAAGCGGATAAGCATGTGGTGAACTGTATAGAGTGTCATCCTCGTACTACTGCACTTGCAAGCTGTGGAATTGAGCAAGACATAAAGTTGTGGACACCACAAGTCATTGACAGTGCTATTCTGCCTACCAATGCTAACAATGTATGCTTTCATTAA

Network for GWHGAAZE018297

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	48	82	4.10E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.314
	SRR3591706	second leaf	0.065
	SRR3591707	mature leaf	0.093
	SRR3591708	Shoot apex	0.260
	SRR3591709	Stem	0.765
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.141
	SRR3591712	Green floral bud	0.056
	SRR3591713	Yellow flower	0.081
SRP173429	SRR8316895	Juvenile bud stage	0.885
	SRR8316896	Juvenile bud stage	0.433
	SRR8316897	Juvenile bud stage	0.029
	SRR8316894	Third green stage	0.001
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.051
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.168
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.084
	SRR8316905	Silver flowering stage	0.056
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.089
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.022
	SRR6706287	Light intensity 50%	0.037
	SRR6706288	Light intensity 20%	0.017
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.429
	CNS0095593	Slightly white alabastrum(diploid) 2	0.489
	CNS0095594	Slightly white alabastrum(diploid) 3	1.042
	CNS0095595	Whole white alabastrum(diploid) 2	0.066
	CNS0095596	Whole white alabastrum(diploid) 3	0.068
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.053
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.195
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.339
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.170
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.650
	CRR073298	Stem 2	0.592
	CRR073299	Stem 3	0.406
	CRR073300	Leaf 1	0.300
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.109
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.036
	CRR073311	Second white 3	0.147
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.154
	CRR073318	Tawny withering 1	0.771
	CRR073319	Tawny withering 2	0.384
	CRR073320	Tawny withering 3	0.480