Gene detail

Detail information of GWHGAAZE018298

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011088645.1	0	PREDICTED: 24-methylenesterol C-methyltransferase 2-like [Sesamum indicum]
Swissprot	tr\|Q39227\|SMT2_ARATH	0	24-methylenesterol C-methyltransferase 2
trEMBL	tr\|A0A022RD77\|A0A022RD77_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU37984.1}
TAIR10	AT1G20330.1	2E-179	sterol methyltransferase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	17613704	17614789	+
GWHAAZE00000005	mRNA	17613704	17614789	+
GWHAAZE00000005	exon	17613704	17614789	+
GWHAAZE00000005	CDS	17613704	17614789	+

Transcript Sequence
>GWHTAAZE018320 ATGGAAACCCTCGCTTTGTTCTGTACCGTCTCTCTCCTCGCCGGCGGTCTCTACTGGTTCGTCTGCATCCTCGGCTCCGCCGAACAGAAAGGCAAACGTGCCGTCCACCTCTCCGGCGGTTCCATCCGCCGCGATCATGTTCAGGACCACTACAAAAAGTACTGGTCATTCTTCCTCCGCCCCAAGGAAATCGAAACCGCCGACAAAGTCCCCGATTTCGTCGACACATTTTACAATCTCGTCACCGACATCTACGAGTGGGGGTGGGGCCAGTCCTTCCACTTCTCCCCTTCCCTCCCGGGAAAATCCCACCGTGACGCCACGCGCTTGCACGAACAGATGGCCGTAGATCTGCTAGGGCTCAAGCCCTACGCCAAAATCCTCGACGCCGGGTGCGGCGTTGGCGGCCCGATGCGTGCCATCGCTGCTCATTCCGGCGCTAACGTTGTCGGTATAACGATCAACGAGTATCAAGTCAAGCGAGCTCGTATGCACAATAAAAAAGCCGGACTAGATAAACTCTGCGAAGTGGTTTGCGGTAATTTCCTTAATATGCCGTTCGTTGATTGCAGCTTCGACGGCGCGTACTCGATCGAGGCTACTTGCCACGCACCGAATCTCGAAGAGGTTTATAGTGAAATATATAGGGTTTTGAAGCCTGGATCGATGTATGTGTCGTACGAATGGGTGACTACGGAGTTGTATAGAGCCGATAATCCAGAACATGTGGAGGTTATACAAGGGATTGAGAGGGGGGATGCATTGCCTGGATTGAGACATTATACGGATATTTCTGAGATTGCGAAGAAAGTCGGGTTTGAAGTTGTGAAGGAGACGGATTTGGCGAAGCCGCCGGCGAAACCTTGGTGGACTAGGCTGAAGATGGGGAAATTGGCTTACTGGAGGAACCACATTGTAGTTATTGTGCTCTCCTCGCTGGGGATTGCGCCCAAAGGAACTGTTGATGTTCATGATATGCTGTTTAAGACTGCTGATTATCTGGCTAGAGGGGGAGAGTCTGGGATTTTCACTCCGATGCACCTGATTCTTTGCAGAAAACCAGAAATTAAGTCCAATTCTGAATAA

Network for GWHGAAZE018298

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08241.13	Methyltransf_11	128	224	4.10E-20
PF08498.11	Sterol_MT_C	291	355	1.70E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08242	E2.1.1.143	Biosynthesis of secondary metabolites	map01110
K08242	E2.1.1.143	Steroid biosynthesis	map00100

Gene Ontology

GO term	Ontology	Name
GO:0006694	biological_process	steroid biosynthetic process
GO:0008168	molecular_function	methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	33.039
	SRR3591706	second leaf	48.791
	SRR3591707	mature leaf	16.959
	SRR3591708	Shoot apex	45.919
	SRR3591709	Stem	18.955
	SRR3591710	White floral bud	15.234
	SRR3591711	White flower	9.366
	SRR3591712	Green floral bud	75.354
	SRR3591713	Yellow flower	2.604
SRP173429	SRR8316895	Juvenile bud stage	33.663
	SRR8316896	Juvenile bud stage	72.517
	SRR8316897	Juvenile bud stage	22.078
	SRR8316894	Third green stage	21.513
	SRR8316900	Third green stage	44.393
	SRR8316901	Third green stage	55.383
	SRR8316898	Complete white stage	2.794
	SRR8316899	Complete white stage	33.677
	SRR8316903	Complete white stage	4.654
	SRR8316902	Silver flowering stage	1.673
	SRR8316904	Silver flowering stage	1.449
	SRR8316905	Silver flowering stage	0.374
	SRR8316906	Gold flowering stage	2.171
	SRR8316907	Gold flowering stage	3.340
	SRR8316908	Gold flowering stage	2.792
SRP132670	SRR6706286	Control	51.116
	SRR6706287	Light intensity 50%	58.122
	SRR6706288	Light intensity 20%	65.876
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	59.478
	CNS0095593	Slightly white alabastrum(diploid) 2	48.707
	CNS0095594	Slightly white alabastrum(diploid) 3	69.827
	CNS0095595	Whole white alabastrum(diploid) 2	27.488
	CNS0095596	Whole white alabastrum(diploid) 3	34.463
	CNS0095597	Whole white alabastrum(diploid) 4	24.338
	CNS0095598	Silvery flower (diploied) 1	22.432
	CNS0095599	Silvery flower (diploied) 2	14.989
	CNS0095600	Silvery flower (diploied) 3	8.096
	CNS0095601	Golden flower (diploid) 1	10.176
	CNS0095602	Golden flower (diploid) 2	10.968
	CNS0095603	Golden flower (diploid) 3	8.335
	CNS0095604	Slightly white alabastrum(tetraploid) 1	70.514
	CNS0095605	Slightly white alabastrum(tetraploid) 2	64.926
	CNS0095606	Slightly white alabastrum(tetraploid) 3	81.240
	CNS0095607	Whole white alabastrum(tetraploid) 1	27.401
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.869
	CNS0095609	Whole white alabastrum(tetraploid) 3	49.984
	CNS0095610	Silvery flower (tetraploid) 1	5.281
	CNS0095611	Silvery flower (tetraploid) 2	6.172
	CNS0095612	Silvery flower (tetraploid) 3	2.337
	CNS0095613	Golden flower (tetraploid) 1	2.252
	CNS0095614	Golden flower (tetraploid) 2	8.532
	CNS0095615	Golden flower (tetraploid) 3	2.018
CRA001975	CRR073297	Stem 1	68.722
	CRR073298	Stem 2	82.974
	CRR073299	Stem 3	92.872
	CRR073300	Leaf 1	71.603
	CRR073301	Leaf 2	86.987
	CRR073302	Leaf 3	93.849
	CRR073303	Juvenile bud 1	41.640
	CRR073304	Juvenile bud 2	23.694
	CRR073305	Juvenile bud 3	40.750
	CRR073306	Third green 1	0.503
	CRR073307	Third green 2	1.124
	CRR073308	Third green 3	1.214
	CRR073309	Second white 1	0.248
	CRR073310	Second white 2	0.406
	CRR073311	Second white 3	0.349
	CRR073312	Silver flowering 1	0.852
	CRR073313	Silver flowering 2	2.899
	CRR073314	Silver flowering 3	1.620
	CRR073315	Gold flowering 1	10.511
	CRR073316	Gold flowering 2	14.499
	CRR073317	Gold flowering 3	15.442
	CRR073318	Tawny withering 1	37.916
	CRR073319	Tawny withering 2	26.943
	CRR073320	Tawny withering 3	41.892