Gene detail

Detail information of GWHGAAZE018307

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN79141.1	2.31442E-42	hypothetical protein VITISV_023967 [Vitis vinifera]
trEMBL	tr\|A5BNY4\|A5BNY4_VITVI	9E-43	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN79141.1}
TAIR10	AT1G34360.1	1E-14	translation initiation factor 3 (IF-3) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	17743478	17744578	+
GWHAAZE00000005	mRNA	17743478	17744578	+
GWHAAZE00000005	exon	17743478	17743603	+
GWHAAZE00000005	exon	17743747	17743809	+
GWHAAZE00000005	exon	17743904	17744578	+
GWHAAZE00000005	CDS	17743478	17743603	+
GWHAAZE00000005	CDS	17743747	17743809	+
GWHAAZE00000005	CDS	17743904	17744578	+

Transcript Sequence
>GWHTAAZE018329 ATGGAGTCAGGTTCTTCTGAAAATAAATTGATTGCATTGGTTCGCTGCTTTTTCCAGGAACAAAAAGACTTGCAAATGAAAGCAGATATGGTTACAAGATTGATGGAGCGTGGTTATCGGGTGAAGTGCATGGCCATTGGTACAGAAGAGCAGGACTTGGGAGGACTGTTGTCCCGTTTCGCTGTTCTGATCGAAGATGTTTCAATTGTAGAAAGTGGACCGCGAGTGGAGAAAAAACAGGCATATGTTATTGTCAGGCATTCCAAGTTCGGACCATCAAAAAAAGGAACCAAGAAACTTTCCAAAATTGTCATGCCCACAGGTCCCATGGGTTCACCACAAACATTGGATGCTGTGGAATCTGGTTCAGAAAATGAGGACGACATGTTTTCTGAAGAGGATGCAAACGATGATTTTGAGGAAGATTTTGATACTAGCAATGACGTAAATGTGGCTCCGAAAAGATCTTTACCTGTAGTTGATTTTACAAAAACGCCATCCCCATCAGTGGCTCCTCCCGTAATTGAGAATAGGTACCGGAGGGATCCAAGAAATGGGCCCCCCCACACAAAACAAATGAATGTTAATGTCCCTAACGCCAGGGACTCGATAAGATCTGGACCAAGTTTTCAGATGTTTGGTCCTACCGAAGCTAACAATACACCTGGAAAACAGAGTGGACCCGCAGTGGTAAATAGATATAAGAAAGGACCAAATGCAAATCCACCTGGATCAAATTTCCAAGGCAGTAGAAGGCCGGATGTTGACAAGGTTGGGCAAGCGAGATGGGGAGGGTTCCATTCAGAGAACTCAAACGTAATCCCAAACAGGAATGCTGAAAGCCAAGCTAAGGTGCAAAGATGA

Network for GWHGAAZE018307

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0271

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006413	biological_process	translational initiation

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.506
	SRR3591706	second leaf	9.738
	SRR3591707	mature leaf	12.185
	SRR3591708	Shoot apex	18.222
	SRR3591709	Stem	20.945
	SRR3591710	White floral bud	17.212
	SRR3591711	White flower	22.094
	SRR3591712	Green floral bud	23.580
	SRR3591713	Yellow flower	16.272
SRP173429	SRR8316895	Juvenile bud stage	12.521
	SRR8316896	Juvenile bud stage	19.313
	SRR8316897	Juvenile bud stage	9.997
	SRR8316894	Third green stage	10.106
	SRR8316900	Third green stage	27.561
	SRR8316901	Third green stage	22.246
	SRR8316898	Complete white stage	13.004
	SRR8316899	Complete white stage	39.867
	SRR8316903	Complete white stage	16.398
	SRR8316902	Silver flowering stage	10.091
	SRR8316904	Silver flowering stage	15.462
	SRR8316905	Silver flowering stage	7.364
	SRR8316906	Gold flowering stage	17.647
	SRR8316907	Gold flowering stage	23.135
	SRR8316908	Gold flowering stage	19.140
SRP132670	SRR6706286	Control	21.473
	SRR6706287	Light intensity 50%	22.678
	SRR6706288	Light intensity 20%	23.903
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.252
	CNS0095593	Slightly white alabastrum(diploid) 2	19.501
	CNS0095594	Slightly white alabastrum(diploid) 3	17.465
	CNS0095595	Whole white alabastrum(diploid) 2	20.299
	CNS0095596	Whole white alabastrum(diploid) 3	20.099
	CNS0095597	Whole white alabastrum(diploid) 4	16.483
	CNS0095598	Silvery flower (diploied) 1	13.956
	CNS0095599	Silvery flower (diploied) 2	10.699
	CNS0095600	Silvery flower (diploied) 3	22.077
	CNS0095601	Golden flower (diploid) 1	10.539
	CNS0095602	Golden flower (diploid) 2	19.956
	CNS0095603	Golden flower (diploid) 3	18.218
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.987
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.082
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.371
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.767
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.973
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.198
	CNS0095610	Silvery flower (tetraploid) 1	17.127
	CNS0095611	Silvery flower (tetraploid) 2	18.499
	CNS0095612	Silvery flower (tetraploid) 3	16.955
	CNS0095613	Golden flower (tetraploid) 1	10.682
	CNS0095614	Golden flower (tetraploid) 2	15.727
	CNS0095615	Golden flower (tetraploid) 3	11.330
CRA001975	CRR073297	Stem 1	20.444
	CRR073298	Stem 2	19.608
	CRR073299	Stem 3	18.231
	CRR073300	Leaf 1	22.816
	CRR073301	Leaf 2	24.628
	CRR073302	Leaf 3	21.349
	CRR073303	Juvenile bud 1	24.994
	CRR073304	Juvenile bud 2	22.999
	CRR073305	Juvenile bud 3	24.354
	CRR073306	Third green 1	5.355
	CRR073307	Third green 2	7.452
	CRR073308	Third green 3	8.287
	CRR073309	Second white 1	8.165
	CRR073310	Second white 2	8.124
	CRR073311	Second white 3	8.992
	CRR073312	Silver flowering 1	4.310
	CRR073313	Silver flowering 2	4.106
	CRR073314	Silver flowering 3	5.069
	CRR073315	Gold flowering 1	16.485
	CRR073316	Gold flowering 2	12.138
	CRR073317	Gold flowering 3	5.034
	CRR073318	Tawny withering 1	17.982
	CRR073319	Tawny withering 2	21.116
	CRR073320	Tawny withering 3	17.697